Traf3ip3 (TRAF3 interacting protein 3) - Rat Genome Database

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Gene: Traf3ip3 (TRAF3 interacting protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Traf3ip3
Name: TRAF3 interacting protein 3
RGD ID: 12612477
Description: ENCODES a protein that exhibits molecular adaptor activity (inferred); INVOLVED IN antiviral innate immune response (ortholog); cellular response to interferon-alpha (ortholog); cellular response to interferon-beta (ortholog); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); parathyroid carcinoma (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: TRAF3-interacting JNK-activating modulator
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934466,074,753 - 66,095,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365573,313,244 - 3,344,819 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365573,315,035 - 3,337,763 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)
mitochondrion  (IEA,ISO)

Molecular Function

References

Genomics

Comparative Map Data
Traf3ip3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934466,074,753 - 66,095,407 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365573,313,244 - 3,344,819 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365573,315,035 - 3,337,763 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRAF3IP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381209,756,053 - 209,782,310 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1209,756,032 - 209,782,320 (+)EnsemblGRCh38hg38GRCh38
GRCh371209,929,398 - 209,955,655 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361207,996,147 - 208,022,288 (+)NCBINCBI36Build 36hg18NCBI36
Celera1183,160,288 - 183,186,562 (+)NCBICelera
Cytogenetic Map1q32.2NCBI
HuRef1180,604,609 - 180,630,813 (+)NCBIHuRef
CHM1_11211,201,767 - 211,227,998 (+)NCBICHM1_1
T2T-CHM13v2.01209,002,813 - 209,029,078 (+)NCBIT2T-CHM13v2.0
Traf3ip3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391192,857,812 - 192,883,854 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1192,857,761 - 192,884,011 (-)EnsemblGRCm39 Ensembl
GRCm381193,175,504 - 193,201,546 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1193,175,453 - 193,201,703 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,001,698 - 195,027,740 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,876,230 - 194,902,210 (-)NCBIMGSCv36mm8
Celera1200,050,588 - 200,076,654 (-)NCBICelera
Cytogenetic Map1H6NCBI
cM Map197.62NCBI
Traf3ip3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr813107,223,499 - 107,248,358 (-)NCBIGRCr8
mRatBN7.213104,694,802 - 104,719,655 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl13104,694,805 - 104,719,673 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx13107,212,415 - 107,237,070 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.013108,596,267 - 108,620,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.013105,814,233 - 105,838,881 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.013111,892,744 - 111,917,368 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl13111,892,760 - 111,917,587 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.013116,447,648 - 116,473,153 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.413109,009,596 - 109,034,265 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.113109,198,700 - 109,223,369 (-)NCBI
Celera13104,125,051 - 104,149,628 (-)NCBICelera
Cytogenetic Map13q27NCBI
Traf3ip3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554892,440,455 - 2,464,700 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554892,442,319 - 2,468,683 (-)NCBIChiLan1.0ChiLan1.0
TRAF3IP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2139,619,080 - 39,645,157 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1139,585,244 - 39,611,411 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01185,332,556 - 185,358,653 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11190,137,880 - 190,162,773 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1190,141,928 - 190,162,598 (+)Ensemblpanpan1.1panPan2
TRAF3IP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.178,421,163 - 8,444,399 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl78,421,788 - 8,444,397 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha77,998,513 - 8,021,530 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.078,121,697 - 8,144,997 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl78,121,700 - 8,144,989 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.178,051,436 - 8,074,680 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.078,148,468 - 8,171,704 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.078,290,781 - 8,309,799 (+)NCBIUU_Cfam_GSD_1.0
UU_Cfam_GSD_1.078,209,919 - 8,233,156 (+)NCBIUU_Cfam_GSD_1.0
TRAF3IP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9133,190,014 - 133,214,207 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19133,190,020 - 133,214,209 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TRAF3IP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12519,671,531 - 19,699,737 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2519,671,693 - 19,695,356 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605520,270,926 - 20,298,064 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Traf3ip3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248072,214,449 - 2,235,048 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248072,214,288 - 2,239,449 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010004404 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000016545   ⟹   ENSSTOP00000014805
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365573,313,244 - 3,344,819 (-)Ensembl
RefSeq Acc Id: XM_005329526   ⟹   XP_005329583
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934466,074,753 - 66,095,407 (-)NCBI
SpeTri2.0NW_0049365573,315,035 - 3,337,763 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329583 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014805.3
GenBank Protein KAG3258180 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329583   ⟸   XM_005329526
- UniProtKB: I3MRR6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000014805   ⟸   ENSSTOT00000016545


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016542 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016545.3 UniProtKB/TrEMBL
NCBI Gene Traf3ip3 ENTREZGENE
PANTHER CENTROSOMAL PROTEIN OF 170 KDA UniProtKB/TrEMBL
  TRAF3-INTERACTING JNK-ACTIVATING MODULATOR UniProtKB/TrEMBL
Superfamily-SCOP Tropomyosin UniProtKB/TrEMBL
UniProt I3MRR6 ENTREZGENE, UniProtKB/TrEMBL