Fam76b (family with sequence similarity 76 member B) - Rat Genome Database

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Gene: Fam76b (family with sequence similarity 76 member B) Ictidomys tridecemlineatus
Analyze
Symbol: Fam76b
Name: family with sequence similarity 76 member B
RGD ID: 12611529
Description: ASSOCIATED WITH ataxia telangiectasia (ortholog); genetic disease (ortholog); intellectual disability (ortholog); FOUND IN nuclear speck (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: family with sequence similarity 76 member B, transcript variant X1; family with sequence similarity 76 member B, transcript variant X2; family with sequence similarity 76 member B, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494780,609,582 - 80,630,366 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367001,915,407 - 1,934,533 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367001,915,370 - 1,933,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Fam76b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494780,609,582 - 80,630,366 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367001,915,407 - 1,934,533 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367001,915,370 - 1,933,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM76B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381195,768,953 - 95,789,782 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1195,768,953 - 95,790,409 (-)EnsemblGRCh38hg38GRCh38
GRCh371195,502,117 - 95,522,946 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361195,141,754 - 95,162,602 (-)NCBINCBI36Build 36hg18NCBI36
Celera1192,800,487 - 92,821,336 (-)NCBICelera
Cytogenetic Map11q21NCBI
HuRef1191,567,880 - 91,588,726 (-)NCBIHuRef
CHM1_11195,385,119 - 95,405,963 (-)NCBICHM1_1
T2T-CHM13v2.01195,776,343 - 95,797,175 (-)NCBIT2T-CHM13v2.0
Fam76b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39913,738,490 - 13,766,033 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl913,739,012 - 13,766,283 (+)EnsemblGRCm39 Ensembl
GRCm38913,827,194 - 13,854,687 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl913,827,716 - 13,854,987 (+)EnsemblGRCm38mm10GRCm38
MGSCv37913,632,171 - 13,650,966 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36913,578,124 - 13,596,919 (+)NCBIMGSCv36mm8
Celera911,106,163 - 11,124,958 (+)NCBICelera
Cytogenetic Map9A1NCBI
cM Map93.51NCBI
Fam76b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8818,971,357 - 18,993,442 (+)NCBIGRCr8
mRatBN7.2810,689,396 - 10,711,847 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl810,688,963 - 10,711,861 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx814,676,736 - 14,695,256 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0812,974,462 - 12,992,982 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0810,950,851 - 10,969,492 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0812,355,767 - 12,378,040 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl812,355,767 - 12,374,689 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0812,306,043 - 12,328,316 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4810,628,599 - 10,647,170 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1810,628,827 - 10,644,767 (+)NCBI
Celera812,190,439 - 12,208,999 (+)NCBICelera
Cytogenetic Map8q12NCBI
Fam76b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955412644,379 - 665,017 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955412617,089 - 664,452 (-)NCBIChiLan1.0ChiLan1.0
FAM76B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2996,614,732 - 96,635,271 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11197,706,197 - 97,726,993 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01190,774,244 - 90,795,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11194,301,937 - 94,322,758 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1194,301,937 - 94,322,788 (-)Ensemblpanpan1.1panPan2
FAM76B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1215,360,773 - 5,461,545 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl215,361,591 - 5,379,759 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha215,370,934 - 5,548,637 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0215,534,546 - 5,712,428 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl215,535,187 - 5,556,990 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1215,329,264 - 5,506,983 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0215,390,915 - 5,568,671 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0215,438,594 - 5,616,336 (+)NCBIUU_Cfam_GSD_1.0
FAM76B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl927,790,150 - 27,812,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1927,790,139 - 27,813,418 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2931,705,850 - 31,727,932 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM76B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1187,024,575 - 87,046,851 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604338,769,943 - 38,790,986 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam76b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473540,626,364 - 40,646,474 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473540,626,450 - 40,646,360 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000022420   ⟹   ENSSTOP00000018877
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367001,915,407 - 1,934,533 (+)Ensembl
RefSeq Acc Id: XM_005338023   ⟹   XP_005338080
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494780,609,582 - 80,630,364 (-)NCBI
SpeTri2.0NW_0049367001,915,373 - 1,933,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021735088   ⟹   XP_021590763
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494780,609,582 - 80,630,366 (-)NCBI
SpeTri2.0NW_0049367001,915,372 - 1,933,758 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285124   ⟹   XP_040141058
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494780,609,582 - 80,629,911 (-)NCBI
RefSeq Acc Id: XM_040285125   ⟹   XP_040141059
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494780,609,582 - 80,629,912 (-)NCBI
RefSeq Acc Id: XM_040285126   ⟹   XP_040141060
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494780,614,974 - 80,629,912 (-)NCBI
RefSeq Acc Id: XM_040285128   ⟹   XP_040141062
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494780,609,582 - 80,629,912 (-)NCBI
RefSeq Acc Id: XP_005338080   ⟸   XM_005338023
- Peptide Label: isoform X3
- UniProtKB: I3N3D1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021590763   ⟸   XM_021735088
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_040141059   ⟸   XM_040285125
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040141062   ⟸   XM_040285128
- Peptide Label: isoform X6
RefSeq Acc Id: XP_040141058   ⟸   XM_040285124
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040141060   ⟸   XM_040285126
- Peptide Label: isoform X5
RefSeq Acc Id: ENSSTOP00000018877   ⟸   ENSSTOT00000022420


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023725 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022420.2 UniProtKB/TrEMBL
InterPro FAM76 UniProtKB/TrEMBL
NCBI Gene Fam76b ENTREZGENE
PANTHER PTHR46176 UniProtKB/TrEMBL
  PTHR46176:SF3 UniProtKB/TrEMBL
Pfam FAM76 UniProtKB/TrEMBL
UniProt I3N3D1 ENTREZGENE, UniProtKB/TrEMBL