Nectin4 (nectin cell adhesion molecule 4) - Rat Genome Database

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Gene: Nectin4 (nectin cell adhesion molecule 4) Ictidomys tridecemlineatus
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Symbol: Nectin4
Name: nectin cell adhesion molecule 4
RGD ID: 12609800
Description: ENCODES a protein that exhibits identical protein binding (ortholog); ASSOCIATED WITH Ectodermal Dysplasia-Syndactyly Syndrome 1 (ortholog); gastrointestinal stromal tumor (ortholog); parathyroid carcinoma (ortholog); FOUND IN adherens junction (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: nectin cell adhesion molecule 4, transcript variant X1; nectin cell adhesion molecule 4, transcript variant X2; nectin cell adhesion molecule 4, transcript variant X3; nectin cell adhesion molecule 4, transcript variant X4; nectin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,171,818 - 7,189,734 (-)NCBI
SpeTri2.0NW_004936903381,383 - 398,339 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Nectin4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244050587,171,818 - 7,189,734 (-)NCBI
SpeTri2.0NW_004936903381,383 - 398,339 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NECTIN4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1161,070,998 - 161,089,558 (-)EnsemblGRCh38hg38GRCh38
GRCh381161,070,998 - 161,089,566 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371161,040,788 - 161,059,348 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361159,308,120 - 159,325,966 (-)NCBINCBI36hg18NCBI36
Build 341157,854,568 - 157,872,415NCBI
Celera1134,107,964 - 134,126,560 (-)NCBI
Cytogenetic Map1q23.3NCBI
HuRef1132,398,195 - 132,416,810 (-)NCBIHuRef
CHM1_11162,437,025 - 162,455,629 (-)NCBICHM1_1
Nectin4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391171,197,741 - 171,215,855 (+)NCBIGRCm39mm39
GRCm39 Ensembl1171,197,667 - 171,216,166 (+)Ensembl
GRCm381171,370,173 - 171,388,287 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1171,370,099 - 171,388,598 (+)EnsemblGRCm38mm10GRCm38
MGSCv371173,300,304 - 173,318,418 (+)NCBIGRCm37mm9NCBIm37
MGSCv361173,207,073 - 173,225,273 (+)NCBImm8
Celera1173,821,772 - 173,839,427 (+)NCBICelera
Cytogenetic Map1H3NCBI
Nectin4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21383,802,589 - 83,821,711 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl1389,755,845 - 89,774,378 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01389,755,665 - 89,774,185 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01394,383,248 - 94,402,000 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41387,275,975 - 87,294,493 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1383,433,644 - 83,452,162 (+)NCBICelera
Cytogenetic Map13q24NCBI
Nectin4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546812,841,369 - 12,858,329 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546812,841,369 - 12,858,331 (-)NCBIChiLan1.0ChiLan1.0
NECTIN4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11140,396,347 - 140,415,606 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1140,397,817 - 140,414,897 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01136,484,235 - 136,502,478 (-)NCBIMhudiblu_PPA_v0panPan3
NECTIN4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13821,378,144 - 21,392,419 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3821,375,556 - 21,392,632 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3821,452,164 - 21,466,905 (+)NCBI
ROS_Cfam_1.03821,487,177 - 21,512,187 (+)NCBI
UMICH_Zoey_3.13821,384,036 - 21,398,772 (+)NCBI
UNSW_CanFamBas_1.03821,798,014 - 21,812,724 (+)NCBI
UU_Cfam_GSD_1.03822,207,287 - 22,222,026 (+)NCBI
NECTIN4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl489,355,407 - 89,374,358 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1489,356,935 - 89,374,358 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2497,211,258 - 97,227,217 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NECTIN4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1202,890,082 - 2,910,271 (+)NCBI
ChlSab1.1 Ensembl202,891,603 - 2,919,915 (+)Ensembl
Vero_WHO_p1.0NW_0236660381,938,908 - 1,957,897 (+)NCBI
Nectin4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624794281,769 - 299,240 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005341826   ⟹   XP_005341883
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,171,818 - 7,189,731 (-)NCBI
SpeTri2.0NW_004936903381,383 - 398,339 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005341827   ⟹   XP_005341884
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,171,818 - 7,189,731 (-)NCBI
SpeTri2.0NW_004936903381,383 - 398,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721137   ⟹   XP_021576812
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,171,818 - 7,189,732 (-)NCBI
SpeTri2.0NW_004936903381,383 - 398,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021721138   ⟹   XP_021576813
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,171,818 - 7,189,733 (-)NCBI
SpeTri2.0NW_004936903381,383 - 398,327 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040287287   ⟹   XP_040143221
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244050587,171,818 - 7,189,734 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005341883   ⟸   XM_005341826
- Peptide Label: isoform X2
- UniProtKB: A0A287CWL2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005341884   ⟸   XM_005341827
- Peptide Label: isoform X4
- UniProtKB: I3NH09 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021576813   ⟸   XM_021721138
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021576812   ⟸   XM_021721137
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_040143221   ⟸   XM_040287287
- Peptide Label: isoform X5
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000022923 ENTREZGENE
Ensembl Protein ENSSTOP00000023656 ENTREZGENE
  ENSSTOP00000025715 ENTREZGENE
NCBI Gene Nectin4 ENTREZGENE
UniProt A0A287CWL2 ENTREZGENE
  I3NH09 ENTREZGENE