Gpm6b (glycoprotein M6B) - Rat Genome Database
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Gene: Gpm6b (glycoprotein M6B) Ictidomys tridecemlineatus
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Symbol: Gpm6b
Name: glycoprotein M6B
RGD ID: 12609780
Description: INVOLVED IN extracellular matrix assembly (ortholog); negative regulation of protein localization to cell surface (ortholog); negative regulation of serotonin uptake (ortholog); ASSOCIATED WITH autistic disorder (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN membrane raft (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: neuronal membrane glycoprotein M6-b
Orthologs:
Homo sapiens (human) : GPM6B (glycoprotein M6B)  HGNC  Alliance
Mus musculus (house mouse) : Gpm6b (glycoprotein m6b)  MGI  Alliance
Rattus norvegicus (Norway rat) : Gpm6b (glycoprotein m6b)  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Gpm6b (glycoprotein M6B)
Pan paniscus (bonobo/pygmy chimpanzee) : GPM6B (glycoprotein M6B)
Canis lupus familiaris (dog) : GPM6B (glycoprotein M6B)
Sus scrofa (pig) : GPM6B (glycoprotein M6B)
Chlorocebus sabaeus (African green monkey) : GPM6B (glycoprotein M6B)
Heterocephalus glaber (naked mole-rat) : Gpm6b (glycoprotein M6B)
more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364703,332,856 - 3,496,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Gpm6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049364703,332,856 - 3,496,178 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPM6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX13,770,939 - 13,938,638 (-)EnsemblGRCh38hg38GRCh38
GRCh38X13,770,922 - 13,938,713 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X13,789,062 - 13,956,861 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X13,698,983 - 13,866,752 (-)NCBINCBI36hg18NCBI36
Build 34X13,551,753 - 13,594,971NCBI
CeleraX17,906,144 - 18,072,735 (-)NCBI
Cytogenetic MapXp22.2NCBI
HuRefX11,546,522 - 11,713,553 (-)NCBIHuRef
CHM1_1X13,819,859 - 13,987,377 (-)NCBICHM1_1
Gpm6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X165,021,775 - 165,172,029 (+)NCBI
GRCm38X166,238,943 - 166,389,033 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX166,238,911 - 166,388,988 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X162,676,875 - 162,826,965 (+)NCBIGRCm37mm9NCBIm37
MGSCv36X161,583,077 - 161,733,093 (+)NCBImm8
CeleraX149,417,598 - 149,568,704 (+)NCBICelera
Cytogenetic MapXF5NCBI
Gpm6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0X29,604,607 - 29,751,174 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX29,607,075 - 29,648,403 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X29,997,897 - 30,145,125 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X48,746,584 - 48,788,414 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X48,800,052 - 48,841,883 (-)NCBI
CeleraX28,432,966 - 28,474,260 (-)NCBICelera
Cytogenetic MapXq13-q14NCBI
Gpm6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555194,287,026 - 4,432,188 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555194,287,203 - 4,432,188 (+)NCBIChiLan1.0ChiLan1.0
GPM6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X13,666,106 - 13,711,964 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX13,666,192 - 13,711,964 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0X6,377,913 - 6,544,826 (-)NCBIMhudiblu_PPA_v0panPan3
GPM6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 EnsemblX10,214,933 - 10,374,837 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1X10,214,889 - 10,375,151 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
GPM6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX10,430,281 - 10,643,429 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X10,429,496 - 10,582,768 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X11,383,146 - 11,536,257 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPM6B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X12,258,386 - 12,429,883 (-)NCBI
Gpm6b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624882220,267 - 374,912 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005315976   ⟹   XP_005316033
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364703,332,856 - 3,378,646 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005315978   ⟹   XP_005316035
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364703,332,856 - 3,378,644 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005315980   ⟹   XP_005316037
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364703,332,856 - 3,496,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357235   ⟹   XP_013212689
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364703,332,856 - 3,378,645 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013357237   ⟹   XP_013212691
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364703,332,856 - 3,378,643 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021722768   ⟹   XP_021578443
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049364703,332,856 - 3,496,178 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005316035   ⟸   XM_005315978
- Peptide Label: isoform X3
- UniProtKB: A0A287D8N1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005316033   ⟸   XM_005315976
- Peptide Label: isoform X1
- UniProtKB: I3M219 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005316037   ⟸   XM_005315980
- Peptide Label: isoform X6
- UniProtKB: A0A287DDW8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013212691   ⟸   XM_013357237
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_013212689   ⟸   XM_013357235
- Peptide Label: isoform X2
- UniProtKB: A0A287DG39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021578443   ⟸   XM_021722768
- Peptide Label: isoform X4
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003324 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000002964 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000029866 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000031706 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000032495 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003315 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000034502 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000035837 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000043193 ENTREZGENE, UniProtKB/TrEMBL
InterPro Myelin_PLP UniProtKB/TrEMBL
  Myelin_PLP_CS UniProtKB/TrEMBL
NCBI Gene Gpm6b ENTREZGENE
PANTHER PTHR11683 UniProtKB/TrEMBL
Pfam Myelin_PLP UniProtKB/TrEMBL
PRINTS MYELINPLP UniProtKB/TrEMBL
PROSITE MYELIN_PLP_1 UniProtKB/TrEMBL
  MYELIN_PLP_2 UniProtKB/TrEMBL
SMART PLP UniProtKB/TrEMBL
UniProt A0A287D8N1 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DDW8 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DG39 ENTREZGENE, UniProtKB/TrEMBL
  I3M219 ENTREZGENE, UniProtKB/TrEMBL