Sox7 (SRY-box transcription factor 7) - Rat Genome Database

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Gene: Sox7 (SRY-box transcription factor 7) Ictidomys tridecemlineatus
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Symbol: Sox7
Name: SRY-box transcription factor 7
RGD ID: 12609663
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (ortholog); DNA-binding transcription factor activity, RNA polymerase II-specific (ortholog); sequence-specific DNA binding (ortholog); INVOLVED IN endoderm formation (ortholog); negative regulation of cell population proliferation (ortholog); negative regulation of transcription, DNA-templated (ortholog); ASSOCIATED WITH Neurodevelopmental Disorders (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: SRY-box 7; transcription factor SOX-7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,963,679 - 5,970,072 (+)NCBI
SpeTri2.0NW_0049366752,616,086 - 2,622,436 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Sox7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049435,963,679 - 5,970,072 (+)NCBI
SpeTri2.0NW_0049366752,616,086 - 2,622,436 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SOX7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl810,723,768 - 10,730,511 (-)EnsemblGRCh38hg38GRCh38
GRCh38810,723,768 - 10,730,511 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37810,581,278 - 10,588,021 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36810,618,688 - 10,625,432 (-)NCBINCBI36hg18NCBI36
Build 34810,618,688 - 10,625,432NCBI
Celera89,709,191 - 9,716,191 (-)NCBI
Cytogenetic Map8p23.1NCBI
HuRef89,511,594 - 9,518,400 (-)NCBIHuRef
CHM1_1810,646,800 - 10,653,606 (-)NCBICHM1_1
Sox7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,181,155 - 64,188,181 (+)NCBIGRCm39mm39
GRCm39 Ensembl1464,181,122 - 64,188,181 (+)Ensembl
GRCm381463,943,706 - 63,950,732 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1463,943,673 - 63,950,732 (+)EnsemblGRCm38mm10GRCm38
MGSCv371464,562,543 - 64,569,569 (+)NCBIGRCm37mm9NCBIm37
MGSCv361462,897,816 - 62,904,842 (+)NCBImm8
Celera1461,720,720 - 61,727,748 (+)NCBICelera
Cytogenetic Map14D1NCBI
Sox7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21538,180,503 - 38,187,264 (+)NCBI
Rnor_6.0 Ensembl1547,293,699 - 47,300,460 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01547,293,699 - 47,300,460 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01551,053,093 - 51,059,854 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41543,207,965 - 43,214,726 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11543,223,666 - 43,228,547 (+)NCBI
Celera1537,862,141 - 37,868,902 (+)NCBICelera
Cytogenetic Map15p12NCBI
Sox7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540352,253,482 - 52,259,884 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540352,253,816 - 52,259,884 (-)NCBIChiLan1.0ChiLan1.0
SOX7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Mhudiblu_PPA_v088,476,357 - 8,483,144 (+)NCBIMhudiblu_PPA_v0panPan3
SOX7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12527,216,111 - 27,222,142 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2527,215,528 - 27,220,227 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2527,871,952 - 27,889,698 (+)NCBI
ROS_Cfam_1.02527,370,450 - 27,388,195 (+)NCBI
UMICH_Zoey_3.12527,324,552 - 27,342,303 (+)NCBI
UNSW_CanFamBas_1.02527,218,744 - 27,236,487 (+)NCBI
UU_Cfam_GSD_1.02527,372,604 - 27,390,369 (+)NCBI
SOX7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1413,938,385 - 13,945,166 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11413,938,381 - 13,945,324 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21415,286,380 - 15,293,330 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SOX7
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.188,368,632 - 8,375,529 (+)NCBI
ChlSab1.1 Ensembl88,368,912 - 8,375,530 (+)Ensembl
Sox7
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462475824,556,436 - 24,562,204 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005337232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005337232   ⟹   XP_005337289
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049435,963,679 - 5,970,072 (+)NCBI
SpeTri2.0NW_0049366752,616,086 - 2,622,436 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005337289 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005337289   ⟸   XM_005337232
- UniProtKB: I3N3X7 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
HMG box   Sox C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025357 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000019073 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021780 UniProtKB/TrEMBL
Gene3D-CATH 1.10.30.10 UniProtKB/TrEMBL
InterPro HMG_box_dom UniProtKB/TrEMBL
  HMG_box_dom_sf UniProtKB/TrEMBL
  Sox7/17/18_central UniProtKB/TrEMBL
  Sox_C UniProtKB/TrEMBL
NCBI Gene Sox7 ENTREZGENE
Pfam HMG_box UniProtKB/TrEMBL
  Sox17_18_mid UniProtKB/TrEMBL
PROSITE HMG_BOX_2 UniProtKB/TrEMBL
  SOX_C UniProtKB/TrEMBL
SMART HMG UniProtKB/TrEMBL
Superfamily-SCOP SSF47095 UniProtKB/TrEMBL
UniProt I3N3X7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-06-18 Sox7  SRY-box transcription factor 7  Sox7  SRY-box 7  Symbol and/or name change 5135510 APPROVED