Vps37b (VPS37B subunit of ESCRT-I) - Rat Genome Database

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Gene: Vps37b (VPS37B subunit of ESCRT-I) Ictidomys tridecemlineatus
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Symbol: Vps37b
Name: VPS37B subunit of ESCRT-I
RGD ID: 12609639
Description: ENCODES a protein that exhibits calcium-dependent protein binding (inferred); INVOLVED IN intracellular transport (inferred); positive regulation of viral budding via host ESCRT complex (inferred); protein transport (inferred); FOUND IN cytoplasm (inferred); endosome (inferred); endosome membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: vacuolar protein sorting-associated protein 37B; VPS37B, ESCRT-I subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,702,859 - 157,734,398 (-)NCBI
SpeTri2.0NW_0049365581,745,041 - 1,776,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Vps37b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118157,702,859 - 157,734,398 (-)NCBI
SpeTri2.0NW_0049365581,745,041 - 1,776,562 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS37B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl12122,865,330 - 122,896,127 (-)EnsemblGRCh38hg38GRCh38
GRCh3812122,865,330 - 122,896,143 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh3712123,349,877 - 123,380,671 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3612121,915,835 - 121,946,665 (-)NCBINCBI36hg18NCBI36
Celera12122,941,170 - 122,971,994 (-)NCBI
Cytogenetic Map12q24.31NCBI
HuRef12120,309,887 - 120,340,737 (-)NCBIHuRef
CHM1_112123,318,165 - 123,349,007 (-)NCBICHM1_1
Vps37b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395124,142,704 - 124,170,323 (-)NCBIGRCm39mm39
GRCm39 Ensembl5124,142,704 - 124,170,333 (-)Ensembl
GRCm385124,004,641 - 124,032,260 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5124,004,641 - 124,032,270 (-)EnsemblGRCm38mm10GRCm38
MGSCv375124,454,650 - 124,482,269 (-)NCBIGRCm37mm9NCBIm37
MGSCv365124,265,259 - 124,292,878 (-)NCBImm8
Celera5121,077,230 - 121,104,435 (-)NCBICelera
Cytogenetic Map5FNCBI
Vps37b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21232,560,047 - 32,589,015 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1232,560,047 - 32,589,014 (+)Ensembl
Rnor_6.01237,984,790 - 38,023,369 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,984,790 - 38,023,368 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01239,857,153 - 39,894,366 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41233,684,358 - 33,713,075 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11233,547,761 - 33,576,464 (+)NCBI
Celera1234,248,132 - 34,276,582 (+)NCBICelera
Cytogenetic Map12q15NCBI
Vps37b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554825,859,234 - 5,884,665 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554825,879,273 - 5,884,217 (+)NCBIChiLan1.0ChiLan1.0
VPS37B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.112124,703,077 - 124,733,889 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl12124,703,077 - 124,733,889 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v012120,469,840 - 120,500,394 (-)NCBIMhudiblu_PPA_v0panPan3
VPS37B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1266,594,981 - 6,621,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl266,595,030 - 6,620,408 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha266,756,791 - 6,783,698 (+)NCBI
ROS_Cfam_1.0266,844,105 - 6,871,052 (+)NCBI
ROS_Cfam_1.0 Ensembl266,844,140 - 6,871,052 (+)Ensembl
UMICH_Zoey_3.1266,776,943 - 6,803,891 (+)NCBI
UNSW_CanFamBas_1.0266,869,672 - 6,896,611 (+)NCBI
UU_Cfam_GSD_1.0266,823,302 - 6,850,224 (+)NCBI
VPS37B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1429,962,042 - 29,994,650 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11429,963,087 - 29,994,650 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21431,651,931 - 31,683,495 (+)NCBISscrofa10.2Sscrofa10.2susScr3
VPS37B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111118,205,062 - 118,235,844 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl11118,205,002 - 118,235,768 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037127,076,961 - 127,109,352 (+)NCBIVero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005329570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005329570   ⟹   XP_005329627
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118157,702,859 - 157,734,398 (-)NCBI
SpeTri2.0NW_0049365581,745,041 - 1,776,562 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005329627 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3279127 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005329627   ⟸   XM_005329570
- UniProtKB: I3N3C1 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
VPS37 C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000023759 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000018867 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000024521 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.660 UniProtKB/TrEMBL
InterPro Helix_hairpin_bin_sf UniProtKB/TrEMBL
  Mod_r UniProtKB/TrEMBL
NCBI Gene Vps37b ENTREZGENE
Pfam Mod_r UniProtKB/TrEMBL
PROSITE VPS37_C UniProtKB/TrEMBL
UniProt I3N3C1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-02-05 Vps37b  VPS37B subunit of ESCRT-I    VPS37B, ESCRT-I subunit  Symbol and/or name change 5135510 APPROVED