Abi3 (ABI family member 3) - Rat Genome Database

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Gene: Abi3 (ABI family member 3) Ictidomys tridecemlineatus
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Symbol: Abi3
Name: ABI family member 3
RGD ID: 12609307
Description: ENCODES a protein that exhibits identical protein binding (ortholog); INVOLVED IN defense response to tumor cell (ortholog); negative regulation of lamellipodium assembly (ortholog); negative regulation of protein localization to plasma membrane (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); FOUND IN cytoplasm (ortholog); lamellipodium (ortholog); SCAR complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ABI gene family member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,770,374 - 24,794,548 (+)NCBI
SpeTri2.0NW_00493649012,280,717 - 12,290,602 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Abi3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,770,374 - 24,794,548 (+)NCBI
SpeTri2.0NW_00493649012,280,717 - 12,290,602 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1749,210,411 - 49,223,225 (+)EnsemblGRCh38hg38GRCh38
GRCh381749,210,582 - 49,223,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371747,288,069 - 47,300,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,642,588 - 44,655,586 (+)NCBINCBI36hg18NCBI36
Build 341744,642,587 - 44,655,586NCBI
Celera1743,742,068 - 43,755,066 (+)NCBI
Cytogenetic Map17q21.32NCBI
HuRef1742,653,954 - 42,666,932 (+)NCBIHuRef
CHM1_11747,352,844 - 47,365,842 (+)NCBICHM1_1
Abi3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,720,898 - 95,733,302 (-)NCBIGRCm39mm39
GRCm39 Ensembl1195,720,900 - 95,733,302 (-)Ensembl
GRCm381195,830,072 - 95,842,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,830,074 - 95,842,476 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,691,386 - 95,703,790 (-)NCBIGRCm37mm9NCBIm37
MGSCv361195,648,481 - 95,658,250 (-)NCBImm8
Celera11105,472,261 - 105,484,667 (-)NCBICelera
Cytogenetic Map11DNCBI
Abi3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21080,769,819 - 80,780,816 (-)NCBImRatBN7.2
Rnor_6.0 Ensembl1083,644,086 - 83,655,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01083,644,086 - 83,655,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01083,448,188 - 83,459,284 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,542,949 - 84,554,040 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11084,557,318 - 84,568,410 (-)NCBI
Celera1079,537,629 - 79,548,619 (-)NCBICelera
Cytogenetic Map10q26NCBI
Abi3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545112,241,084 - 12,248,857 (-)NCBIChiLan1.0ChiLan1.0
ABI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1178,364,561 - 8,376,930 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,364,561 - 8,376,930 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0178,381,551 - 8,394,537 (-)NCBIMhudiblu_PPA_v0panPan3
ABI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,374,823 - 25,385,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,374,525 - 25,385,003 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,834,241 - 24,844,759 (+)NCBI
ROS_Cfam_1.0926,170,737 - 26,181,212 (+)NCBI
UMICH_Zoey_3.1924,938,804 - 24,949,363 (+)NCBI
UNSW_CanFamBas_1.0925,197,882 - 25,208,480 (+)NCBI
UU_Cfam_GSD_1.0925,326,932 - 25,337,496 (+)NCBI
LOC100621521
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11225,426,116 - 25,441,309 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,368,386 - 25,383,802 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABI3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,613,308 - 69,625,887 (+)NCBI
Vero_WHO_p1.0NW_02366607740,718,582 - 40,731,186 (+)NCBI
Abi3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247955,448,375 - 5,455,784 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005321700   ⟹   XP_005321757
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560224,784,400 - 24,794,548 (+)NCBI
SpeTri2.0NW_00493649012,280,717 - 12,290,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040268889   ⟹   XP_040124823
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560224,784,393 - 24,794,548 (+)NCBI
RefSeq Acc Id: XM_040268890   ⟹   XP_040124824
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560224,770,374 - 24,794,548 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005321757 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124823 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124824 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3269195 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005321757   ⟸   XM_005321700
- Peptide Label: isoform X1
- UniProtKB: I3MXI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040124824   ⟸   XM_040268890
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040124823   ⟸   XM_040268889
- Peptide Label: isoform X2
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020017 ENTREZGENE
Ensembl Protein ENSSTOP00000016826 ENTREZGENE
NCBI Gene Abi3 ENTREZGENE
UniProt I3MXI1 ENTREZGENE