Abi3 (ABI family member 3) - Rat Genome Database

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Gene: Abi3 (ABI family member 3) Ictidomys tridecemlineatus
Analyze
Symbol: Abi3
Name: ABI family member 3
RGD ID: 12609307
Description: ENCODES a protein that exhibits identical protein binding (inferred); SH3 domain binding (inferred); signaling adaptor activity (inferred); INVOLVED IN regulation of cell migration (ortholog); ASSOCIATED WITH Alzheimer's disease (ortholog); genetic disease (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN actin-based cell projection (inferred); cytoplasm (inferred); lamellipodium (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ABI gene family member 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,770,374 - 24,794,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649012,276,239 - 12,290,793 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649012,280,717 - 12,290,602 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Abi3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560224,770,374 - 24,794,548 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649012,276,239 - 12,290,793 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649012,280,717 - 12,290,602 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ABI3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381749,210,707 - 49,223,225 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1749,210,411 - 49,223,225 (+)EnsemblGRCh38hg38GRCh38
GRCh371747,288,069 - 47,300,587 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361744,642,588 - 44,655,586 (+)NCBINCBI36Build 36hg18NCBI36
Build 341744,642,587 - 44,655,586NCBI
Celera1743,742,068 - 43,755,066 (+)NCBICelera
Cytogenetic Map17q21.32NCBI
HuRef1742,653,954 - 42,666,932 (+)NCBIHuRef
CHM1_11747,352,844 - 47,365,842 (+)NCBICHM1_1
T2T-CHM13v2.01750,073,790 - 50,086,309 (+)NCBIT2T-CHM13v2.0
Abi3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391195,720,898 - 95,733,302 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1195,720,900 - 95,733,302 (-)EnsemblGRCm39 Ensembl
GRCm381195,830,072 - 95,842,476 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1195,830,074 - 95,842,476 (-)EnsemblGRCm38mm10GRCm38
MGSCv371195,691,386 - 95,703,790 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361195,648,481 - 95,658,250 (-)NCBIMGSCv36mm8
Celera11105,472,261 - 105,484,667 (-)NCBICelera
Cytogenetic Map11DNCBI
cM Map1159.01NCBI
Abi3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81081,266,571 - 81,277,561 (-)NCBIGRCr8
mRatBN7.21080,769,819 - 80,780,816 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1080,769,822 - 80,780,816 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1085,718,513 - 85,729,491 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01085,216,547 - 85,227,512 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01080,608,647 - 80,619,712 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01083,644,086 - 83,655,182 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1083,644,086 - 83,655,182 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01083,448,188 - 83,459,284 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41084,542,949 - 84,554,040 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11084,557,318 - 84,568,410 (-)NCBI
Celera1079,537,629 - 79,548,619 (-)NCBICelera
Cytogenetic Map10q26NCBI
Abi3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495545112,241,084 - 12,248,857 (-)NCBIChiLan1.0ChiLan1.0
ABI3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21915,944,600 - 15,957,229 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11717,910,636 - 17,923,151 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0178,381,551 - 8,394,537 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1178,364,561 - 8,376,930 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl178,364,561 - 8,376,930 (-)Ensemblpanpan1.1panPan2
ABI3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1925,374,823 - 25,385,016 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl925,374,525 - 25,385,003 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha924,834,241 - 24,844,759 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0926,170,737 - 26,181,212 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl926,171,065 - 26,181,206 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1924,938,804 - 24,949,363 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0925,197,882 - 25,208,480 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0925,326,932 - 25,337,496 (+)NCBIUU_Cfam_GSD_1.0
LOC100621521
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11225,426,116 - 25,441,309 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21225,368,386 - 25,383,802 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ABI3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11669,613,308 - 69,625,887 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607740,718,582 - 40,731,186 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Abi3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247955,448,618 - 5,455,539 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247955,448,375 - 5,455,784 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000025648   ⟹   ENSSTOP00000016826
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649012,276,239 - 12,290,793 (-)Ensembl
RefSeq Acc Id: XM_005321700   ⟹   XP_005321757
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560224,784,400 - 24,794,548 (+)NCBI
SpeTri2.0NW_00493649012,280,717 - 12,290,602 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040268889   ⟹   XP_040124823
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560224,784,393 - 24,794,548 (+)NCBI
RefSeq Acc Id: XM_040268890   ⟹   XP_040124824
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560224,770,374 - 24,794,548 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005321757 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124823 (Get FASTA)   NCBI Sequence Viewer  
  XP_040124824 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016826.2
GenBank Protein KAG3269195 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005321757   ⟸   XM_005321700
- Peptide Label: isoform X1
- UniProtKB: I3MXI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040124824   ⟸   XM_040268890
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040124823   ⟸   XM_040268889
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000016826   ⟸   ENSSTOT00000025648
Protein Domains
SH3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020017 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025648.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1620 UniProtKB/TrEMBL
  SH3 Domains UniProtKB/TrEMBL
InterPro ABI UniProtKB/TrEMBL
  ABI3 UniProtKB/TrEMBL
  Abl-interactor_HHR_dom UniProtKB/TrEMBL
  SH3-like_dom_sf UniProtKB/TrEMBL
  SH3_domain UniProtKB/TrEMBL
NCBI Gene Abi3 ENTREZGENE
PANTHER PTHR10460 UniProtKB/TrEMBL
  PTHR10460:SF7 UniProtKB/TrEMBL
Pfam Abi_HHR UniProtKB/TrEMBL
  SH3_1 UniProtKB/TrEMBL
PRINTS SH3DOMAIN UniProtKB/TrEMBL
PROSITE SH3 UniProtKB/TrEMBL
SMART SH3 UniProtKB/TrEMBL
Superfamily-SCOP SSF50044 UniProtKB/TrEMBL
UniProt I3MXI1 ENTREZGENE, UniProtKB/TrEMBL