Gzf1 (GDNF inducible zinc finger protein 1) - Rat Genome Database

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Gene: Gzf1 (GDNF inducible zinc finger protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Gzf1
Name: GDNF inducible zinc finger protein 1
RGD ID: 12607137
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (inferred); DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN branching involved in ureteric bud morphogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); JOINT LAXITY, SHORT STATURE, AND MYOPIA (ortholog); FOUND IN nucleolus (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: GDNF-inducible zinc finger protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640148,787,727 - 148,803,185 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,208,224 - 2,218,539 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,208,185 - 2,223,651 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleolus  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Gzf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640148,787,727 - 148,803,185 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366202,208,224 - 2,218,539 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366202,208,185 - 2,223,651 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GZF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382023,361,127 - 23,373,062 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2023,362,182 - 23,373,062 (+)EnsemblGRCh38hg38GRCh38
GRCh372023,342,819 - 23,353,699 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362023,293,021 - 23,301,683 (+)NCBINCBI36Build 36hg18NCBI36
Build 342023,293,020 - 23,301,682NCBI
Celera2023,418,394 - 23,427,056 (+)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2023,306,335 - 23,315,323 (+)NCBIHuRef
CHM1_12023,345,483 - 23,354,145 (+)NCBICHM1_1
T2T-CHM13v2.02023,420,667 - 23,432,602 (+)NCBIT2T-CHM13v2.0
Gzf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392148,521,305 - 148,534,869 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2148,522,943 - 148,534,869 (+)EnsemblGRCm39 Ensembl
GRCm382148,679,384 - 148,692,949 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2148,681,023 - 148,692,949 (+)EnsemblGRCm38mm10GRCm38
MGSCv372148,506,856 - 148,518,685 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362148,372,605 - 148,384,388 (+)NCBIMGSCv36mm8
Celera2149,949,267 - 149,961,219 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.53NCBI
Gzf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83156,572,152 - 156,584,369 (+)NCBIGRCr8
mRatBN7.23136,119,004 - 136,131,223 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3136,119,113 - 136,131,223 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3140,071,230 - 140,083,337 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03148,655,378 - 148,667,485 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03146,344,724 - 146,356,832 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03143,003,706 - 143,015,906 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3143,003,796 - 143,015,904 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03149,414,267 - 149,426,466 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43137,415,095 - 137,427,203 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3134,962,171 - 134,974,279 (+)NCBICelera
Cytogenetic Map3q41NCBI
Gzf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,384,130 - 30,391,298 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541530,381,153 - 30,391,239 (+)NCBIChiLan1.0ChiLan1.0
GZF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22124,234,200 - 24,246,226 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12024,231,301 - 24,242,272 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02023,302,958 - 23,316,469 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12023,655,293 - 23,666,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2023,655,293 - 23,665,989 (+)Ensemblpanpan1.1panPan2
GZF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.124260,139 - 268,861 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl24261,904 - 299,287 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha24281,908 - 291,967 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.024652,534 - 662,594 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl24652,548 - 691,358 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.124254,812 - 264,868 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.024354,180 - 364,244 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.024638,059 - 648,141 (-)NCBIUU_Cfam_GSD_1.0
GZF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,351,497 - 30,359,845 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,351,433 - 30,360,245 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,440,446 - 34,448,794 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GZF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1252,366,146 - 52,377,423 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl252,369,557 - 52,375,594 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660787,182,746 - 7,193,339 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gzf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474123,035,577 - 23,046,188 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474123,035,592 - 23,044,071 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000009815   ⟹   ENSSTOP00000008802
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366202,208,224 - 2,218,539 (-)Ensembl
RefSeq Acc Id: XM_005334602   ⟹   XP_005334659
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640148,787,727 - 148,798,202 (-)NCBI
SpeTri2.0NW_0049366202,208,185 - 2,218,600 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732731   ⟹   XP_021588406
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640148,787,727 - 148,799,511 (-)NCBI
SpeTri2.0NW_0049366202,208,185 - 2,218,982 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732732   ⟹   XP_021588407
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640148,787,727 - 148,799,511 (-)NCBI
SpeTri2.0NW_0049366202,208,185 - 2,218,738 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732733   ⟹   XP_021588408
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640148,787,727 - 148,803,185 (-)NCBI
SpeTri2.0NW_0049366202,208,185 - 2,223,651 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732734   ⟹   XP_021588409
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640148,787,727 - 148,797,974 (-)NCBI
SpeTri2.0NW_0049366202,208,185 - 2,217,181 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040274135   ⟹   XP_040130069
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640148,787,727 - 148,798,203 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005334659   ⟸   XM_005334602
- Peptide Label: isoform X1
- UniProtKB: I3ME99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021588408   ⟸   XM_021732733
- Peptide Label: isoform X1
- UniProtKB: I3ME99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021588406   ⟸   XM_021732731
- Peptide Label: isoform X1
- UniProtKB: I3ME99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021588407   ⟸   XM_021732732
- Peptide Label: isoform X1
- UniProtKB: I3ME99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021588409   ⟸   XM_021732734
- Peptide Label: isoform X1
- UniProtKB: I3ME99 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130069   ⟸   XM_040274135
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000008802   ⟸   ENSSTOT00000009815
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009820 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009815.3 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Gzf1 ENTREZGENE
PANTHER RH47711P-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3ME99 ENTREZGENE, UniProtKB/TrEMBL