Scn4b (sodium voltage-gated channel beta subunit 4) - Rat Genome Database

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Gene: Scn4b (sodium voltage-gated channel beta subunit 4) Ictidomys tridecemlineatus
Analyze
Symbol: Scn4b
Name: sodium voltage-gated channel beta subunit 4
RGD ID: 12606973
Description: ENCODES a protein that exhibits sodium channel regulator activity (inferred); transmembrane transporter binding (inferred); voltage-gated sodium channel activity (inferred); INVOLVED IN establishment of localization in cell (ortholog); regulation of sodium ion transmembrane transporter activity (ortholog); sodium ion transmembrane transport (ortholog); ASSOCIATED WITH CD3epsilon deficiency (ortholog); chromosome 11 partial duplication syndrome (ortholog); dilated cardiomyopathy (ortholog); FOUND IN intercalated disc (inferred); membrane (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium channel subunit beta-4; sodium channel, voltage-gated, type IV, beta subunit
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,314,832 - 100,331,455 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,236,231 - 3,252,692 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,236,238 - 3,252,550 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Scn4b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,314,832 - 100,331,455 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,236,231 - 3,252,692 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,236,238 - 3,252,550 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SCN4B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,133,377 - 118,152,823 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,133,377 - 118,152,888 (-)EnsemblGRCh38hg38GRCh38
GRCh3711118,004,092 - 118,023,538 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,509,302 - 117,528,747 (-)NCBINCBI36Build 36hg18NCBI36
Build 3411117,509,301 - 117,528,745NCBI
Celera11115,161,938 - 115,181,485 (-)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11113,937,739 - 113,957,294 (-)NCBIHuRef
CHM1_111117,889,900 - 117,909,461 (-)NCBICHM1_1
T2T-CHM13v2.011118,149,764 - 118,169,227 (-)NCBIT2T-CHM13v2.0
Scn4b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39945,049,922 - 45,065,453 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl945,049,693 - 45,065,450 (+)EnsemblGRCm39 Ensembl
GRCm38945,138,624 - 45,154,155 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl945,138,395 - 45,154,152 (+)EnsemblGRCm38mm10GRCm38
MGSCv37944,947,125 - 44,962,144 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,890,037 - 44,905,056 (+)NCBIMGSCv36mm8
Celera942,414,621 - 42,429,658 (+)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Scn4b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8854,343,873 - 54,359,046 (+)NCBIGRCr8
mRatBN7.2845,446,580 - 45,462,294 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,446,215 - 45,462,292 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,942,557 - 50,957,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0849,221,301 - 49,236,457 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0847,091,873 - 47,107,048 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,441,106 - 49,456,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,441,106 - 49,456,279 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0848,067,555 - 48,082,728 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4848,091,561 - 48,106,735 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1848,109,134 - 48,115,501 (+)NCBI
Celera845,031,630 - 45,046,803 (+)NCBICelera
Cytogenetic Map8q22NCBI
Scn4b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,311,797 - 19,331,201 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,312,697 - 19,330,913 (-)NCBIChiLan1.0ChiLan1.0
SCN4B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29118,833,696 - 118,853,389 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111119,938,643 - 119,958,340 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011112,967,190 - 112,986,727 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111116,899,268 - 116,918,893 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11116,899,268 - 116,918,892 (-)Ensemblpanpan1.1panPan2
SCN4B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,552,347 - 15,564,085 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,543,632 - 15,563,486 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,594,377 - 15,614,867 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,486,041 - 15,506,544 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,486,160 - 15,505,945 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,623,816 - 15,644,324 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,527,612 - 15,548,083 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,569,051 - 15,589,560 (+)NCBIUU_Cfam_GSD_1.0
SCN4B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1945,451,473 - 45,475,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,492,495 - 50,516,631 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SCN4B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,507,121 - 109,528,512 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,509,979 - 109,528,721 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,500,685 - 16,521,279 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Scn4b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,549,815 - 13,570,026 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,550,950 - 13,569,937 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000022118   ⟹   ENSSTOP00000015089
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365423,236,231 - 3,252,692 (-)Ensembl
RefSeq Acc Id: XM_005328318   ⟹   XP_005328375
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,314,832 - 100,331,092 (-)NCBI
SpeTri2.0NW_0049365423,236,238 - 3,252,550 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040285305   ⟹   XP_040141239
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947100,314,832 - 100,331,455 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005328375 (Get FASTA)   NCBI Sequence Viewer  
  XP_040141239 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000015089.2
GenBank Protein KAG3286636 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005328375   ⟸   XM_005328318
- Peptide Label: isoform X1
- UniProtKB: I3MSJ4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141239   ⟸   XM_040285305
- Peptide Label: isoform X2
Ensembl Acc Id: ENSSTOP00000015089   ⟸   ENSSTOT00000022118
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028585 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000022118.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Myelin_P0-rel UniProtKB/TrEMBL
NCBI Gene Scn4b ENTREZGENE
PANTHER PTHR13869 UniProtKB/TrEMBL
  PTHR13869:SF14 UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt I3MSJ4 ENTREZGENE, UniProtKB/TrEMBL