Apln (apelin) - Rat Genome Database

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Gene: Apln (apelin) Ictidomys tridecemlineatus
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Symbol: Apln
Name: apelin
RGD ID: 12606682
Description: ENCODES a protein that exhibits apelin receptor binding (ortholog); hormone activity (ortholog); identical protein binding (ortholog); INVOLVED IN apelin receptor signaling pathway (ortholog); coronary vasculature development (ortholog); drinking behavior (ortholog); PARTICIPATES IN apelin signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); Cardiomegaly (ortholog); FOUND IN extracellular region (ortholog); extracellular space (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,087,672 - 99,097,573 (-)NCBI
SpeTri2.0NW_0049364791,889,930 - 1,899,811 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Apln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,087,672 - 99,097,573 (-)NCBI
SpeTri2.0NW_0049364791,889,930 - 1,899,811 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APLN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX129,645,259 - 129,654,956 (-)EnsemblGRCh38hg38GRCh38
GRCh38X129,645,259 - 129,654,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X128,779,236 - 128,788,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X128,607,006 - 128,616,595 (-)NCBINCBI36hg18NCBI36
Build 34X128,504,860 - 128,514,449NCBI
CeleraX129,165,798 - 129,175,495 (-)NCBI
Cytogenetic MapXq26.1NCBI
HuRefX118,183,705 - 118,187,243 (-)NCBIHuRef
CHM1_1X128,690,603 - 128,700,300 (-)NCBICHM1_1
Apln
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X47,114,023 - 47,123,730 (-)NCBIGRCm39mm39
GRCm39 EnsemblX47,114,023 - 47,123,730 (-)Ensembl
GRCm38X48,025,146 - 48,034,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX48,025,146 - 48,034,853 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X45,378,323 - 45,388,029 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X44,269,773 - 44,279,461 (-)NCBImm8
CeleraX35,527,952 - 35,537,661 (-)NCBICelera
Cytogenetic MapXA4NCBI
Apln
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X127,180,801 - 127,213,567 (-)NCBImRatBN7.2
mRatBN7.2 EnsemblX127,203,823 - 127,213,391 (-)Ensembl
Rnor_6.0X134,856,719 - 134,866,210 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX134,856,726 - 134,866,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X134,929,116 - 134,938,607 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X134,387,285 - 134,396,762 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1X134,460,719 - 134,470,195 (-)NCBI
CeleraX126,154,452 - 126,163,943 (-)NCBICelera
Cytogenetic MapXq36NCBI
Apln
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554735,346,747 - 5,356,359 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554735,346,822 - 5,356,359 (+)NCBIChiLan1.0ChiLan1.0
APLN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X129,073,135 - 129,082,484 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X118,775,509 - 118,785,224 (-)NCBIMhudiblu_PPA_v0panPan3
APLN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X100,863,360 - 100,873,105 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX87,037,314 - 87,047,056 (-)NCBI
ROS_Cfam_1.0X102,715,584 - 102,725,338 (-)NCBI
UMICH_Zoey_3.1X100,133,401 - 100,143,158 (-)NCBI
UNSW_CanFamBas_1.0X101,979,328 - 101,989,085 (-)NCBI
UU_Cfam_GSD_1.0X101,757,148 - 101,766,893 (-)NCBI
APLN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,236,748 - 106,246,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,236,746 - 106,246,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X122,005,684 - 122,015,536 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APLN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X104,885,639 - 104,896,371 (-)NCBI
ChlSab1.1 EnsemblX104,888,996 - 104,895,014 (-)Ensembl
Vero_WHO_p1.0NW_02366606542,370,529 - 42,380,294 (-)NCBI
Apln
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247978,857,490 - 8,866,157 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005319321   ⟹   XP_005319378
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X99,087,672 - 99,097,573 (-)NCBI
SpeTri2.0NW_0049364791,889,930 - 1,899,811 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319378 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3272893 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005319378   ⟸   XM_005319321
- UniProtKB: A0A287D3D8 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000034051 ENTREZGENE
Ensembl Protein ENSSTOP00000028068 ENTREZGENE
NCBI Gene Apln ENTREZGENE
UniProt A0A287D3D8 ENTREZGENE