Apln (apelin) - Rat Genome Database

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Gene: Apln (apelin) Ictidomys tridecemlineatus
Analyze
Symbol: Apln
Name: apelin
RGD ID: 12606682
Description: ENCODES a protein that exhibits apelin receptor binding (ortholog); identical protein binding (ortholog); INVOLVED IN drinking behavior (ortholog); feeding behavior (ortholog); negative regulation of blood pressure (ortholog); PARTICIPATES IN apelin signaling pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); autosomal hemophilia A (ortholog); FOUND IN extracellular space (ortholog); perinuclear region of cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,087,672 - 99,097,573 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364791,890,229 - 1,899,730 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364791,889,930 - 1,899,811 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Apln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,087,672 - 99,097,573 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364791,890,229 - 1,899,730 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364791,889,930 - 1,899,811 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APLN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X129,645,259 - 129,654,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX129,645,259 - 129,654,956 (-)EnsemblGRCh38hg38GRCh38
GRCh37X128,779,236 - 128,788,933 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X128,607,006 - 128,616,595 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X128,504,860 - 128,514,449NCBI
CeleraX129,165,798 - 129,175,495 (-)NCBICelera
Cytogenetic MapXq26.1NCBI
HuRefX118,183,705 - 118,187,243 (-)NCBIHuRef
CHM1_1X128,690,603 - 128,700,300 (-)NCBICHM1_1
T2T-CHM13v2.0X127,964,047 - 127,973,744 (-)NCBIT2T-CHM13v2.0
Apln
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X47,114,023 - 47,123,730 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX47,114,023 - 47,123,730 (-)EnsemblGRCm39 Ensembl
GRCm38X48,025,146 - 48,034,853 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX48,025,146 - 48,034,853 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X45,378,323 - 45,388,029 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X44,269,773 - 44,279,461 (-)NCBIMGSCv36mm8
CeleraX35,527,952 - 35,537,661 (-)NCBICelera
Cytogenetic MapXA4NCBI
cM MapX25.48NCBI
Apln
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X132,058,739 - 132,091,518 (-)NCBIGRCr8
mRatBN7.2X127,180,801 - 127,213,567 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX127,203,823 - 127,213,391 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX129,330,091 - 129,339,567 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X132,900,432 - 132,909,910 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X130,427,238 - 130,436,715 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X134,856,719 - 134,866,210 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX134,856,726 - 134,866,210 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X134,929,116 - 134,938,607 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X134,387,285 - 134,396,762 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1X134,460,719 - 134,470,195 (-)NCBI
CeleraX126,154,452 - 126,163,943 (-)NCBICelera
Cytogenetic MapXq36NCBI
Apln
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554735,346,747 - 5,356,359 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554735,346,822 - 5,356,359 (+)NCBIChiLan1.0ChiLan1.0
APLN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X129,068,533 - 129,078,279 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X129,072,147 - 129,081,892 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X118,775,509 - 118,785,224 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X129,073,135 - 129,082,484 (-)NCBIpanpan1.1PanPan1.1panPan2
APLN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X100,863,360 - 100,873,105 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX87,037,314 - 87,047,056 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X102,715,584 - 102,725,338 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX102,716,128 - 102,725,606 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X100,133,401 - 100,143,158 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X101,979,328 - 101,989,085 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X101,757,148 - 101,766,893 (-)NCBIUU_Cfam_GSD_1.0
APLN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,236,749 - 106,246,377 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,236,746 - 106,246,563 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X122,005,684 - 122,015,536 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APLN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X104,885,639 - 104,896,371 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX104,888,996 - 104,895,014 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606542,370,529 - 42,380,294 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Apln
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247978,857,070 - 8,866,329 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247978,857,490 - 8,866,157 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSTOT00000037257   ⟹   ENSSTOP00000028068
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364791,890,229 - 1,899,730 (+)Ensembl
RefSeq Acc Id: XM_005319321   ⟹   XP_005319378
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X99,087,672 - 99,097,573 (-)NCBI
SpeTri2.0NW_0049364791,889,930 - 1,899,811 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319378 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000028068.1
GenBank Protein KAG3272893 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005319378   ⟸   XM_005319321
- UniProtKB: A0A287D3D8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSTOP00000028068   ⟸   ENSSTOT00000037257


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000034051 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000037257.1 UniProtKB/TrEMBL
InterPro Apelin UniProtKB/TrEMBL
NCBI Gene Apln ENTREZGENE
PANTHER APELIN UniProtKB/TrEMBL
  PTHR15953 UniProtKB/TrEMBL
Pfam Apelin UniProtKB/TrEMBL
UniProt A0A287D3D8 ENTREZGENE, UniProtKB/TrEMBL