Gene: Foxb2 (forkhead box B2) Ictidomys tridecemlineatus |
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Analyze |
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Symbol: |
Foxb2 |
Name: |
forkhead box B2 |
RGD ID: |
12606153 |
Description: |
ASSOCIATED WITH genetic disease (ortholog) |
Type: |
protein-coding
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RefSeq Status: |
MODEL |
Previously known as: |
forkhead box protein B2 |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
SpeTri2.0 - Squirrel SpeTri2.0 Assembly |
Position: |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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Imported Disease Annotations - ClinVar
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References
Additional References at PubMed
Genomics
Comparative Map Data
Foxb2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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FOXB2 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 9 | 77,019,655 - 77,020,953 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 9 | 77,019,655 - 77,020,953 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 9 | 79,634,571 - 79,635,869 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 9 | 78,824,391 - 78,825,689 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 9 | 50,211,724 - 50,213,022 (+) | NCBI | | Celera | | | Cytogenetic Map | 9 | q21.2 | NCBI | | | | | HuRef | 9 | 49,465,661 - 49,466,785 (+) | NCBI | | HuRef | | | CHM1_1 | 9 | 79,781,051 - 79,782,349 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 9 | 89,176,172 - 89,177,470 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Foxb2 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 19 | 16,849,680 - 16,851,194 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 19 | 16,849,683 - 16,851,169 (-) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 19 | 16,872,316 - 16,873,830 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 19 | 16,872,319 - 16,873,805 (-) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 19 | 16,946,806 - 16,948,320 (-) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 19 | 16,939,335 - 16,940,849 (-) | NCBI | | MGSCv36 | mm8 | | Celera | 19 | 17,534,739 - 17,536,253 (-) | NCBI | | Celera | | | Cytogenetic Map | 19 | B | NCBI | | | | | cM Map | 19 | 12.26 | NCBI | | | | |
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Foxb2 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 1 | 223,659,499 - 223,660,994 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 1 | 214,232,731 - 214,234,226 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 1 | 214,232,731 - 214,234,226 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 1 | 222,566,031 - 222,567,526 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 1 | 229,496,588 - 229,498,083 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 1 | 222,320,581 - 222,322,076 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 1 | 235,917,300 - 235,918,792 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 237,065,753 - 237,067,553 (+) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 1 | 235,917,341 - 235,918,613 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 1 | 244,368,839 - 244,369,683 (+) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Rnor_5.0 | 1 | 243,232,785 - 243,233,435 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 1 | 220,325,612 - 220,327,107 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 1 | 211,559,134 - 211,560,474 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | q43 | NCBI | | | | |
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Foxb2 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955512 | 2,380,887 - 2,382,185 (-) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955512 | 2,380,887 - 2,382,185 (-) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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FOXB2 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 11 | 76,182,314 - 76,183,701 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 9 | 76,188,253 - 76,189,640 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 9 | 47,822,895 - 47,824,296 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 9 | 75,875,871 - 75,877,272 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | |
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FOXB2 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 1 | 81,542,936 - 81,544,339 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 1 | 81,542,936 - 81,544,339 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 1 | 82,005,948 - 82,007,249 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 1 | 81,956,150 - 81,957,451 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 1 | 81,956,150 - 81,957,451 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 1 | 81,740,307 - 81,741,607 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 1 | 81,462,946 - 81,464,247 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 1 | 82,191,820 - 82,193,121 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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FOXB2 (Sus scrofa - pig) |
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FOXB2 (Chlorocebus sabaeus - green monkey) |
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Foxb2 (Heterocephalus glaber - naked mole-rat) |
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Expression
Sequence
RefSeq Acc Id: |
XM_005324134 ⟹ XP_005324191 |
Type: |
CODING |
Position: |
Squirrel Assembly | Chr | Position (strand) | Source |
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HiC_Itri_2 | NW_024404947 | 128,701,654 - 128,705,923 (-) | NCBI | SpeTri2.0 | NW_004936503 | 12,468,559 - 12,469,900 (+) | NCBI |
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Sequence: |
ATGCCGCGGCCGGGAAAGAGTTCGTACAGTGACCAAAAGCCGCCCTATTCGTACATCTCGCTGA CGGCCATGGCCATTCAGCACTCGGCGGAGAAGATGCTGCCGCTGAGCGACATTTACAAGTTCAT CATGGAGCGCTTCCCCTACTACCGCGAGCACACTCAGCGCTGGCAGAACAGCCTGCGCCACAAC CTCTCCTTCAACGACTGCTTCATCAAGATCCCGAGGCGGCCAGACCAGCCGGGTAAGGGTAGCT TCTGGGCGCTGCACCCCGACTGCGGCGACATGTTTGAGAACGGCAGCTTCCTGCGGCGCCGCAA GCGCTTCAAGGTGCTGCGCGCCGACCACGCTCACCTGCATGCTGGAAGCACCAAGGGCGCGCCG GGAGCGGGTTCCGCGGGTCACCTGCATCCCCACCATCCCCATCACCCACACCACCACCATCACC ATCATCACGCTGCCACACACCACCACCATCACCACCACCCGCCCCAGCCGCCTCCGCCCCCGCC CCCGCCGGTCCCTGTAGGCCCAGAGTACGGGGCATTCGGGGTGCCAGTCAAGGCCCTGTGCCAC TCAGCAAGCCAGAGCCTGCCGGCTGTGCCGGTGCCCATCAAGCCTACACCTGCGCTACCACCCG TGACCGCGCTGCCGCCGGCGCTCACGGTCCCGGCGGCTTCACAGCAGCCGCCAACGCCAACTGC GGTGTGCTCTGCCTCCACAGCCTCGCCCGCAGCCTCTTTGCTGGAGCCCACCGCTCCAAGCGCG GCGGAGAGCAAGGGCGGCTCCCTGCACTCGGTTCTGGTGCACTCCTAA
hide sequence
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RefSeq Acc Id: |
XP_005324191 ⟸ XM_005324134 |
- Sequence: |
MPRPGKSSYSDQKPPYSYISLTAMAIQHSAEKMLPLSDIYKFIMERFPYYREHTQRWQNSLRHN LSFNDCFIKIPRRPDQPGKGSFWALHPDCGDMFENGSFLRRRKRFKVLRADHAHLHAGSTKGAP GAGSAGHLHPHHPHHPHHHHHHHHAATHHHHHHHPPQPPPPPPPPVPVGPEYGAFGVPVKALCH SASQSLPAVPVPIKPTPALPPVTALPPALTVPAASQQPPTPTAVCSASTASPAASLLEPTAPSA AESKGGSLHSVLVHS
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Additional Information
External Database Links
Database |
Acc Id |
Source(s) |
NCBI Gene |
Foxb2 |
ENTREZGENE |
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