Foxb2 (forkhead box B2) - Rat Genome Database

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Gene: Foxb2 (forkhead box B2) Ictidomys tridecemlineatus
Analyze
Symbol: Foxb2
Name: forkhead box B2
RGD ID: 12606153
Description: ASSOCIATED WITH genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: forkhead box protein B2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947128,701,654 - 128,705,923 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650312,468,559 - 12,469,900 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Foxb2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947128,701,654 - 128,705,923 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493650312,468,559 - 12,469,900 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FOXB2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38977,019,655 - 77,020,953 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl977,019,655 - 77,020,953 (+)EnsemblGRCh38hg38GRCh38
GRCh37979,634,571 - 79,635,869 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36978,824,391 - 78,825,689 (+)NCBINCBI36Build 36hg18NCBI36
Celera950,211,724 - 50,213,022 (+)NCBICelera
Cytogenetic Map9q21.2NCBI
HuRef949,465,661 - 49,466,785 (+)NCBIHuRef
CHM1_1979,781,051 - 79,782,349 (+)NCBICHM1_1
T2T-CHM13v2.0989,176,172 - 89,177,470 (+)NCBIT2T-CHM13v2.0
Foxb2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391916,849,680 - 16,851,194 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1916,849,683 - 16,851,169 (-)EnsemblGRCm39 Ensembl
GRCm381916,872,316 - 16,873,830 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1916,872,319 - 16,873,805 (-)EnsemblGRCm38mm10GRCm38
MGSCv371916,946,806 - 16,948,320 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361916,939,335 - 16,940,849 (-)NCBIMGSCv36mm8
Celera1917,534,739 - 17,536,253 (-)NCBICelera
Cytogenetic Map19BNCBI
cM Map1912.26NCBI
Foxb2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81223,659,499 - 223,660,994 (-)NCBIGRCr8
mRatBN7.21214,232,731 - 214,234,226 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,232,731 - 214,234,226 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1222,566,031 - 222,567,526 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01229,496,588 - 229,498,083 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01222,320,581 - 222,322,076 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01235,917,300 - 235,918,792 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1237,065,753 - 237,067,553 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1235,917,341 - 235,918,613 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01244,368,839 - 244,369,683 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.01243,232,785 - 243,233,435 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41220,325,612 - 220,327,107 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1211,559,134 - 211,560,474 (-)NCBICelera
Cytogenetic Map1q43NCBI
Foxb2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555122,380,887 - 2,382,185 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555122,380,887 - 2,382,185 (-)NCBIChiLan1.0ChiLan1.0
FOXB2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21176,182,314 - 76,183,701 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1976,188,253 - 76,189,640 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0947,822,895 - 47,824,296 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1975,875,871 - 75,877,272 (+)NCBIpanpan1.1PanPan1.1panPan2
FOXB2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1181,542,936 - 81,544,339 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl181,542,936 - 81,544,339 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha182,005,948 - 82,007,249 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0181,956,150 - 81,957,451 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl181,956,150 - 81,957,451 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1181,740,307 - 81,741,607 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0181,462,946 - 81,464,247 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0182,191,820 - 82,193,121 (-)NCBIUU_Cfam_GSD_1.0
FOXB2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.11229,956,159 - 229,957,628 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21256,669,184 - 256,671,875 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXB2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11288,002,417 - 88,007,710 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603876,467,678 - 76,468,976 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxb2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248114,511,429 - 4,512,713 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248114,511,392 - 4,512,716 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005324134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_005324134   ⟹   XP_005324191
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947128,701,654 - 128,705,923 (-)NCBI
SpeTri2.0NW_00493650312,468,559 - 12,469,900 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324191 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3287088 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005324191   ⟸   XM_005324134
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Foxb2 ENTREZGENE