Adarb1 (adenosine deaminase RNA specific B1)

Gene: Adarb1 (adenosine deaminase RNA specific B1) Ictidomys tridecemlineatus

Analyze

Symbol:

Adarb1

Name:

adenosine deaminase RNA specific B1

RGD ID:

12605770

Description:

ENCODES a protein that exhibits double-stranded RNA adenosine deaminase activity (ortholog); double-stranded RNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN adenosine to inosine editing (ortholog); base conversion or substitution editing (ortholog); facial nerve morphogenesis (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH amyotrophic lateral sclerosis (ortholog); autistic disorder (ortholog); Axenfeld-Rieger syndrome type 3 (ortholog); FOUND IN nucleoplasm (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

adenosine deaminase, RNA specific B1; adenosine deaminase, RNA specific B1, transcript variant X1; adenosine deaminase, RNA specific B1, transcript variant X2; adenosine deaminase, RNA specific B1, transcript variant X3; adenosine deaminase, RNA specific B1, transcript variant X4; double-stranded RNA-specific editase 1

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	37,992,436 - 38,073,951 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936778	1,053,871 - 1,137,828 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936778	1,056,259 - 1,137,772 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis (ISO)

autistic disorder (ISO)

Axenfeld-Rieger syndrome type 3 (ISO)

cataract 9 multiple types (ISO)

developmental and epileptic encephalopathy 30 (ISO)

genetic disease (ISO)

homocystinuria (ISO)

microcephaly (ISO)

Neurodevelopmental Disorder with Hypotonia, Microcephaly, and Seizures (ISO)

Neurodevelopmental Disorders (ISO)

obesity (ISO)

polycystic ovary syndrome (ISO)

primary ciliary dyskinesia (ISO)

progressive myoclonus epilepsy (ISO)

Spinal Cord Injuries (ISO)

syndromic intellectual disability (ISO)

transient cerebral ischemia (ISO)

visual epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenosine to inosine editing (IEA,ISO)

base conversion or substitution editing (IEA,ISO)

facial nerve morphogenesis (IEA,ISO)

hypoglossal nerve morphogenesis (IEA,ISO)

innervation (IEA,ISO)

motor behavior (IEA,ISO)

motor neuron apoptotic process (IEA,ISO)

mRNA modification (ISO)

multicellular organism growth (IEA,ISO)

muscle tissue morphogenesis (IEA,ISO)

negative regulation of cell migration (IEA)

negative regulation of cell population proliferation (IEA)

neuromuscular process controlling posture (IEA,ISO)

neuromuscular synaptic transmission (IEA,ISO)

positive regulation of mRNA processing (ISO)

positive regulation of viral genome replication (IEA)

regulation of cell cycle (IEA)

RNA processing (IEA)

spinal cord ventral commissure morphogenesis (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

nucleolus (IEA)

nucleoplasm (IEA,ISO)

nucleus (IEA)

synapse (IEA)

Molecular Function

adenosine deaminase activity (IEA)

double-stranded RNA adenosine deaminase activity (IEA,ISO)

double-stranded RNA binding (IEA,ISO)

identical protein binding (ISO)

protein binding (ISO)

RNA binding (IEA,ISO)

tRNA-specific adenosine deaminase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

microRNA pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Adarb1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	37,992,436 - 38,073,951 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936778	1,053,871 - 1,137,828 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936778	1,056,259 - 1,137,772 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ADARB1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	45,074,578 - 45,226,563 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	45,073,853 - 45,226,560 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	46,494,493 - 46,646,478 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	45,318,943 - 45,470,902 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	45,318,942 - 45,470,902	NCBI
Celera	21	31,601,137 - 31,754,043 (+)	NCBI		Celera
Cytogenetic Map	21	q22.3	NCBI
HuRef	21	31,920,569 - 32,018,419 (+)	NCBI		HuRef
CHM1_1	21	46,055,410 - 46,207,429 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	43,436,861 - 43,590,594 (+)	NCBI		T2T-CHM13v2.0

Adarb1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	77,126,561 - 77,254,125 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	77,126,560 - 77,254,104 (-)	Ensembl		GRCm39 Ensembl
GRCm38	10	77,290,727 - 77,418,292 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	77,290,726 - 77,418,270 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	76,753,472 - 76,881,018 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	76,734,449 - 76,861,989 (-)	NCBI		MGSCv36	mm8
Celera	10	78,334,514 - 78,460,578 (-)	NCBI		Celera
Cytogenetic Map	10	C1	NCBI
cM Map	10	39.72	NCBI

Adarb1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	11,222,171 - 11,350,416 (+)	NCBI		GRCr8
mRatBN7.2	20	11,222,569 - 11,350,854 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	20	11,222,583 - 11,350,852 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	20	11,919,732 - 12,047,120 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	11,280,701 - 11,408,103 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	11,752,435 - 11,879,837 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	11,972,352 - 12,101,022 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	11,972,381 - 12,101,047 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	14,137,226 - 14,264,945 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	11,616,718 - 11,747,294 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	11,678,671 - 11,744,168 (+)	NCBI
Celera	20	12,725,154 - 12,852,814 (+)	NCBI		Celera
Cytogenetic Map	20	p12	NCBI

Adarb1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	41,886,286 - 41,962,897 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955407	41,886,286 - 41,962,846 (+)	NCBI	ChiLan1.0	ChiLan1.0

ADARB1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	41,127,906 - 41,286,535 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	35,998,325 - 36,156,517 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	31,374,841 - 31,532,721 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	44,663,136 - 44,816,756 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	44,715,931 - 44,815,748 (+)	Ensembl	panpan1.1		panPan2

ADARB1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	38,715,529 - 38,799,353 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	38,678,184 - 38,796,521 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	37,859,697 - 37,997,419 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	38,267,094 - 38,405,109 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	38,321,094 - 38,405,109 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	38,129,384 - 38,267,671 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	38,090,539 - 38,229,180 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	38,604,578 - 38,742,906 (+)	NCBI		UU_Cfam_GSD_1.0

ADARB1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	207,691,174 - 207,791,802 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	207,746,915 - 207,791,809 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	217,610,539 - 217,651,965 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ADARB1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	88,780,954 - 88,915,672 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	88,833,707 - 88,918,066 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666054	16,962,483 - 17,101,687 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Adarb1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	30,549,257 - 30,635,269 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	30,549,195 - 30,635,081 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005340192	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013365149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001230217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000015795 ⟹ ENSSTOP00000014136

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936778	1,053,871 - 1,137,828 (-)	Ensembl

RefSeq Acc Id:

XM_005340192 ⟹ XP_005340249

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404971	38,016,999 - 38,073,951 (+)	NCBI
SpeTri2.0	NW_004936778	1,056,259 - 1,137,772 (-)	NCBI

Sequence:

show sequence

TGGAGGCCTTCCGGCTGGCAAGTCCAAGGTGCGACGGCGGAGACGCTGTGGGCATTGCCGGCCT
AGCTTCCCCTGGCCCGGGCAGGCCGTCCTGGGGTCAGCCAGTCGGAGCACGCCGAGACAGAAAC
GGCCTCCGCCAGTCAAGAACTCTCAAAAGCACTTTGCCATGGATCTAGAAGATGAAGAGAACAT
GAGTTCCAGCAGCACTGACATCAAGGAGAACCGTAGTCTGGACATCGTGTCCCCCAAGGACGGC
AGTGCCCCTGGGCCTGGTGAGGGCCTGCAGCTCCCTGGTGGGGGCAGCAGTGGCACTGGCCGGA
AGCGGCCCCTGGAGGAGGGCAGCAATGGCCACTCCAGGTACCGCCTGAAGAAGCGGAGGAAAGC
GCCAGGGCCCGTGCTGCCCAAGAATGCACTGATGCAGCTGAACGAGATCAAGCCCGGCCTGCAG
TACACGCTGCTCTCCCAGACGGGGCCCGTGCACGCCCCGCTCTTCGTCATGTCCGTGGAGGTTA
ACGGGCAGGTCTTCGAGGGCTCCGGCCCCACCAAGAAGAAGGCAAAGCTGCATGCTGCAGAGAA
GGCCCTGAGGTCCTTCGTCCAGTTTCCCAATGCCTCCGAGGCCCACCTGGCTATGGGTAGGACC
CTGTCCGTGCACACAGACTTCACTTCTGACCAGGCCGACTTCCCTGACACGCTCTTCAATGGCT
TCGAGACCCCAGACCGGGTGGAGTCCTTCTGCATGGGCTCCAACGGAGACGAGTCCCTCAGCTC
CAGCGGGGACCTCAGCCTGTCGGCCTCACCTGTGCCCGCCAGCCTTGCCCAGCCCCCCCTGCCG
GGCCCACCACCCTTCCCGCCGCCCAGCGGGAAGAACCCTGTGATGATCCTGAACGAGCTGCGTC
CAGGGCTGAAGTATGACTTCCTCTCTGAGAGCGGGGAGAGCCATGCCAAGAGCTTCGTCATGTC
CGTGGTGGTGGACGGCCAGTTCTTCGAGGGGTCGGGCAGGAACAAGAAGCTGGCCAAGGCTCGG
GCTGCACAATCGGCCCTGGCCACCATCTTCAACCTGCACCTGGACCAGACGCCATCACGCCAGC
CCGTGCCCAGCGAGGGGCTGCAGCTGCACCTGCCACAGGTGCTGGCAGACGCCGTCTCGCGCCT
GGTCCTGGGTAAGTTCAGTGACCTGACAGACAACTTCTCCTCACCTCACGCACGCAGAAAAGTG
CTGGCCGGAGTCGTCATGACCACAGGCACAGACGTGAAGGACGCCAAGGTGATCAGTGTGTCCA
CGGGGACCAAGTGCATCAATGGGGAGTACATGAGCGACCGCGGCTTGGCGCTGAACGATTGCCA
CGCGGAGATCATCGCCCGCCGCTCCCTGCTCAGGTTCCTCTACACGCAGCTGGAGCTCTACCTG
AATAGCAAAGAGGACCAGAAGAGCTCCATCTTCCAGAAGTCGGAGCGCGGAGGGTTCCGGCTGA
AGGACACCGTGCAGTTCCACCTGTACATCAGCACCTCTCCCTGCGGAGACGCCCGGATATTCTC
GCCCCACGAGCCGGTGCTCGAAGAACCCTCAGATCGACATCCAAACCGCAAAGCGAGGGGACAG
CTGCGGACAAAAATTGAGTCTGGCGAGGGGACGATCCCGGTGCGGTCGAACGCCAGCATCCAGA
CGTGGGATGGGGTGCTACAGGGGGAGAGGCTGCTGACCATGTCCTGCAGCGACAAGATAGCACG
CTGGAACGTGGTGGGCACCCAGGGCTCCCTGCTCAGCATCTTCGTGGAGCCCGTCTACTTCTCC
AGCATCATCCTGGGCAGCCTGTACCACGGCGACCACCTCTCCAGGGCCATGTACCAGCGCATCT
CCAACATCGAGGACCTGCCGCCCCTCTACACCCTCAACAAGCCCCTGCTCAGCGGCATTAGCAA
CGCAGAGGCGCGGCAGCCGGGCAAGGCGCCCAACTTCAGCGTCAACTGGACGGTCGGTGACAGC
GCCCTGGAGGTCATCAACGCCACCACGGGGAAGGACGAGCTGGGCCGCCCCTCGCGCCTGTGTA
AGCACGCGTTGTACTCTCGCTGGATGCGTGTGCACGGCAAGGTGCCCCCCCACTTGCTGCGGAC
CAAGATCATCAAGCCCACCACCTACCACGAGTCCAAGCTGGCGGCTAAGGAGTACCAGGCCGCC
AAGGCCCGCCTCTTCACCGCCTTCATCAAGGCAGGGCTGGGCGCCTGGGTGGAGAAGCCCACGG
AGCAGGACCAGTTCTCCCTCACGCCCTGACCCGTGGGCCCAGCTCAGGGTGCAGGGCTGTCCGC
CCCACACCATCCCCGAACCTCACGTCTGGACTGGGGCAGGCTCACACCTCGGCGAGGGCCCAGG
GACACTGTGTCCTGCACCATCTCCAAACCTCACCTCTGAACTCGGGCAGGCACACACCCCGGTG
AGGCACGGGCCAGGGACCACTGGCGTCACGCACCCGACCAGGGCAGGTGTGGGGCTGTGGGGTG
CCGGGCATCTCACGTCTGCACTGGGACAGGTGCACTCATGTCCCTTCCTGAGTCATCCAGTGAC
TGCTTCCAACTCCAGTTTACGTTAGAGATCGAGTTCTACTGAGTAGGGCTTCGTGAGTGTAGGA
ACGGAGACACGGCTGCGTGTGAGATCCTCGAATAAATAATTTATTCAGAGCTAGGAA

hide sequence

RefSeq Acc Id:

XM_013365148 ⟹ XP_013220602

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404971	37,992,436 - 38,073,951 (+)	NCBI
SpeTri2.0	NW_004936778	1,056,259 - 1,137,772 (-)	NCBI

Sequence:

show sequence

TGGAGGCCTTCCGGCTGGCAAGTCCAAGGTGCGACGGCGGAGACGCTGTGGGCATTGCCGGCCT
AGCTTCCCCTGGCCCGGGCAGGCCGTCCTGGGGTCAGCCAGTCGGAGCACGCCGAGACAGAAAC
GGCCTCCGCCAGTCAAGAACTCTCAAAAGCACTTTGCCATGGATCTAGAAGATGAAGAGAACAT
GAGTTCCAGCAGCACTGACATCAAGGAGAACCGTAGTCTGGACATCGTGTCCCCCAAGGACGGC
AGTGCCCCTGGGCCTGGTGAGGGCCTGCAGCTCCCTGGTGGGGGCAGCAGTGGCACTGGCCGGA
AGCGGCCCCTGGAGGAGGGCAGCAATGGCCACTCCAGGTACCGCCTGAAGAAGCGGAGGAAAGC
GCCAGGGCCCGTGCTGCCCAAGAATGCACTGATGCAGCTGAACGAGATCAAGCCCGGCCTGCAG
TACACGCTGCTCTCCCAGACGGGGCCCGTGCACGCCCCGCTCTTCGTCATGTCCGTGGAGGTTA
ACGGGCAGGTCTTCGAGGGCTCCGGCCCCACCAAGAAGAAGGCAAAGCTGCATGCTGCAGAGAA
GGCCCTGAGGTCCTTCGTCCAGTTTCCCAATGCCTCCGAGGCCCACCTGGCTATGGGTAGGACC
CTGTCCGTGCACACAGACTTCACTTCTGACCAGGCCGACTTCCCTGACACGCTCTTCAATGGCT
TCGAGACCCCAGACCGGGTGGAGTCCTTCTGCATGGGCTCCAACGGAGACGAGTCCCTCAGCTC
CAGCGGGGACCTCAGCCTGTCGGCCTCACCTGTGCCCGCCAGCCTTGCCCAGCCCCCCCTGCCG
GGCCCACCACCCTTCCCGCCGCCCAGCGGGAAGAACCCTGTGATGATCCTGAACGAGCTGCGTC
CAGGGCTGAAGTATGACTTCCTCTCTGAGAGCGGGGAGAGCCATGCCAAGAGCTTCGTCATGTC
CGTGGTGGTGGACGGCCAGTTCTTCGAGGGGTCGGGCAGGAACAAGAAGCTGGCCAAGGCTCGG
GCTGCACAATCGGCCCTGGCCACCATCTTCAACCTGCACCTGGACCAGACGCCATCACGCCAGC
CCGTGCCCAGCGAGGGGCTGCAGCTGCACCTGCCACAGGTGCTGGCAGACGCCGTCTCGCGCCT
GGTCCTGGGTAAGTTCAGTGACCTGACAGACAACTTCTCCTCACCTCACGCACGCAGAAAAGTG
CTGGCCGGAGTCGTCATGACCACAGGCACAGACGTGAAGGACGCCAAGGTGATCAGTGTGTCCA
CGGGGACCAAGTGCATCAATGGGGAGTACATGAGCGACCGCGGCTTGGCGCTGAACGATTGCCA
CGCGGAGATCATCGCCCGCCGCTCCCTGCTCAGGTTCCTCTACACGCAGCTGGAGCTCTACCTG
AATAGCAAAGAGGACCAGAAGAGCTCCATCTTCCAGAAGTCGGAGCGCGGAGGGTTCCGGCTGA
AGGACACCGTGCAGTTCCACCTGTACATCAGCACCTCTCCCTGCGGAGACGCCCGGATATTCTC
GCCCCACGAGCCGGTGCTCGAAGGTGTGAGGCTGGACCAGCAGGCAGCAGAACCCTCAGATCGA
CATCCAAACCGCAAAGCGAGGGGACAGCTGCGGACAAAAATTGAGTCTGGCGAGGGGACGATCC
CGGTGCGGTCGAACGCCAGCATCCAGACGTGGGATGGGGTGCTACAGGGGGAGAGGCTGCTGAC
CATGTCCTGCAGCGACAAGATAGCACGCTGGAACGTGGTGGGCACCCAGGGCTCCCTGCTCAGC
ATCTTCGTGGAGCCCGTCTACTTCTCCAGCATCATCCTGGGCAGCCTGTACCACGGCGACCACC
TCTCCAGGGCCATGTACCAGCGCATCTCCAACATCGAGGACCTGCCGCCCCTCTACACCCTCAA
CAAGCCCCTGCTCAGCGGCATTAGCAACGCAGAGGCGCGGCAGCCGGGCAAGGCGCCCAACTTC
AGCGTCAACTGGACGGTCGGTGACAGCGCCCTGGAGGTCATCAACGCCACCACGGGGAAGGACG
AGCTGGGCCGCCCCTCGCGCCTGTGTAAGCACGCGTTGTACTCTCGCTGGATGCGTGTGCACGG
CAAGGTGCCCCCCCACTTGCTGCGGACCAAGATCATCAAGCCCACCACCTACCACGAGTCCAAG
CTGGCGGCTAAGGAGTACCAGGCCGCCAAGGCCCGCCTCTTCACCGCCTTCATCAAGGCAGGGC
TGGGCGCCTGGGTGGAGAAGCCCACGGAGCAGGACCAGTTCTCCCTCACGCCCTGACCCGTGGG
CCCAGCTCAGGGTGCAGGGCTGTCCGCCCCACACCATCCCCGAACCTCACGTCTGGACTGGGGC
AGGCTCACACCTCGGCGAGGGCCCAGGGACACTGTGTCCTGCACCATCTCCAAACCTCACCTCT
GAACTCGGGCAGGCACACACCCCGGTGAGGCACGGGCCAGGGACCACTGGCGTCACGCACCCGA
CCAGGGCAGGTGTGGGGCTGTGGGGTGCCGGGCATCTCACGTCTGCACTGGGACAGGTGCACTC
ATGTCCCTTCCTGAGTCATCCAGTGACTGCTTCCAACTCCAGTTTACGTTAGAGATCGAGTTCT
ACTGAGTAGGGCTTCGTGAGTGTAGGAACGGAGACACGGCTGCGTGTGAGATCCTCGAATAAAT
AATTTATTCAGAGCTAGGAA

hide sequence

RefSeq Acc Id:

XM_013365149 ⟹ XP_013220603

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404971	38,016,999 - 38,073,951 (+)	NCBI
SpeTri2.0	NW_004936778	1,056,707 - 1,137,772 (-)	NCBI

Sequence:

show sequence

TGGAGGCCTTCCGGCTGGCAAGTCCAAGGTGCGACGGCGGAGACGCTGTGGGCATTGCCGGCCT
AGCTTCCCCTGGCCCGGGCAGGCCGTCCTGGGGTCAGCCAGTCGGAGCACGCCGAGACAGAAAC
GGCCTCCGCCAGTCAAGAACTCTCAAAAGCACTTTGCCATGGATCTAGAAGATGAAGAGAACAT
GAGTTCCAGCAGCACTGACATCAAGGAGAACCGTAGTCTGGACATCGTGTCCCCCAAGGACGGC
AGTGCCCCTGGGCCTGGTGAGGGCCTGCAGCTCCCTGGTGGGGGCAGCAGTGGCACTGGCCGGA
AGCGGCCCCTGGAGGAGGGCAGCAATGGCCACTCCAGGTACCGCCTGAAGAAGCGGAGGAAAGC
GCCAGGGCCCGTGCTGCCCAAGAATGCACTGATGCAGCTGAACGAGATCAAGCCCGGCCTGCAG
TACACGCTGCTCTCCCAGACGGGGCCCGTGCACGCCCCGCTCTTCGTCATGTCCGTGGAGGTTA
ACGGGCAGGTCTTCGAGGGCTCCGGCCCCACCAAGAAGAAGGCAAAGCTGCATGCTGCAGAGAA
GGCCCTGAGGTCCTTCGTCCAGTTTCCCAATGCCTCCGAGGCCCACCTGGCTATGGGTAGGACC
CTGTCCGTGCACACAGACTTCACTTCTGACCAGGCCGACTTCCCTGACACGCTCTTCAATGGCT
TCGAGACCCCAGACCGGGTGGAGTCCTTCTGCATGGGCTCCAACGGAGACGAGTCCCTCAGCTC
CAGCGGGGACCTCAGCCTGTCGGCCTCACCTGTGCCCGCCAGCCTTGCCCAGCCCCCCCTGCCG
GGCCCACCACCCTTCCCGCCGCCCAGCGGGAAGAACCCTGTGATGATCCTGAACGAGCTGCGTC
CAGGGCTGAAGTATGACTTCCTCTCTGAGAGCGGGGAGAGCCATGCCAAGAGCTTCGTCATGTC
CGTGGTGGTGGACGGCCAGTTCTTCGAGGGGTCGGGCAGGAACAAGAAGCTGGCCAAGGCTCGG
GCTGCACAATCGGCCCTGGCCACCATCTTCAACCTGCACCTGGACCAGACGCCATCACGCCAGC
CCGTGCCCAGCGAGGGGCTGCAGCTGCACCTGCCACAGGTGCTGGCAGACGCCGTCTCGCGCCT
GGTCCTGGGTAAGTTCAGTGACCTGACAGACAACTTCTCCTCACCTCACGCACGCAGAAAAGTG
CTGGCCGGAGTCGTCATGACCACAGGCACAGACGTGAAGGACGCCAAGGTGATCAGTGTGTCCA
CGGGGACCAAGTGCATCAATGGGGAGTACATGAGCGACCGCGGCTTGGCGCTGAACGATTGCCA
CGCGGAGATCATCGCCCGCCGCTCCCTGCTCAGGTTCCTCTACACGCAGCTGGAGCTCTACCTG
AATAGCAAAGAGGACCAGAAGAGCTCCATCTTCCAGAAGTCGGAGCGCGGAGGGTTCCGGCTGA
AGGACACCGTGCAGTTCCACCTGTACATCAGCACCTCTCCCTGCGGAGACGCCCGGATATTCTC
GCCCCACGAGCCGGTGCTCGAAGGTGTGAGGCTGGACCAGCAGGCAGCAGAACCCTCAGATCGA
CATCCAAACCGCAAAGCGAGGGGACAGCTGCGGACAAAAATTGAGTCTGGCGAGGGGACGATCC
CGGTGCGGTCGAACGCCAGCATCCAGACGTGGGATGGGGTGCTACAGGGGGAGAGGCTGCTGAC
CATGTCCTGCAGCGACAAGATAGCACGCTGGAACGTGGTGGGCACCCAGGGCTCCCTGCTCAGC
ATCTTCGTGGAGCCCGTCTACTTCTCCAGCATCATCCTGGGCAGCCTGTACCACGGCGACCACC
TCTCCAGGGCCATGTACCAGCGCATCTCCAACATCGAGGACCTGCCGCCCCTCTACACCCTCAA
CAAGCCCCTGCTCAGCGGCATTAGCAACGCAGAGGCGCGGCAGCCGGGCAAGGCGCCCAACTTC
AGCGTCAACTGGACGGTCGGTGACAGCGCCCTGGAGGTCATCAACGCCACCACGGGGAAGGACG
AGCTGGGCCGCCCCTCGCGCCTGTGTGCCCCCCCACTTGCTGCGGACCAAGATCATCAAGCCCA
CCACCTACCACGAGTCCAAGCTGGCGGCTAAGGAGTACCAGGCCGCCAAGGCCCGCCTCTTCAC
CGCCTTCATCAAGGCAGGGCTGGGCGCCTGGGTGGAGAAG

hide sequence

RefSeq Acc Id:

XM_040287133 ⟹ XP_040143067

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404971	38,016,999 - 38,071,015 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005340249	(Get FASTA)	NCBI Sequence Viewer
	XP_013220602	(Get FASTA)	NCBI Sequence Viewer
	XP_013220603	(Get FASTA)	NCBI Sequence Viewer
	XP_040143067	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000014136.3
GenBank Protein	KAG3284133	(Get FASTA)	NCBI Sequence Viewer
	KAG3284134	(Get FASTA)	NCBI Sequence Viewer
	KAG3284135	(Get FASTA)	NCBI Sequence Viewer
	KAG3284136	(Get FASTA)	NCBI Sequence Viewer
	KAG3284137	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005340249 ⟸ XM_005340192
- Peptide Label:	isoform X1
- UniProtKB:	I3MQD3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLEDEENMSSSSTDIKENRSLDIVSPKDGSAPGPGEGLQLPGGGSSGTGRKRPLEEGSNGHSR YRLKKRRKAPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKK KAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVHTDFTSDQADFPDTLFNGFETPDRVESFCMG SNGDESLSSSGDLSLSASPVPASLAQPPLPGPPPFPPPSGKNPVMILNELRPGLKYDFLSESGE SHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALATIFNLHLDQTPSRQPVPSEGLQLHLPQ VLADAVSRLVLGKFSDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSD RGLALNDCHAEIIARRSLLRFLYTQLELYLNSKEDQKSSIFQKSERGGFRLKDTVQFHLYISTS PCGDARIFSPHEPVLEEPSDRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDGVLQGERLLT MSCSDKIARWNVVGTQGSLLSIFVEPVYFSSIILGSLYHGDHLSRAMYQRISNIEDLPPLYTLN KPLLSGISNAEARQPGKAPNFSVNWTVGDSALEVINATTGKDELGRPSRLCKHALYSRWMRVHG KVPPHLLRTKIIKPTTYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQFSLTP hide sequence

RefSeq Acc Id:

XP_013220602 ⟸ XM_013365148

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDLEDEENMSSSSTDIKENRSLDIVSPKDGSAPGPGEGLQLPGGGSSGTGRKRPLEEGSNGHSR
YRLKKRRKAPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKK
KAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVHTDFTSDQADFPDTLFNGFETPDRVESFCMG
SNGDESLSSSGDLSLSASPVPASLAQPPLPGPPPFPPPSGKNPVMILNELRPGLKYDFLSESGE
SHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALATIFNLHLDQTPSRQPVPSEGLQLHLPQ
VLADAVSRLVLGKFSDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSD
RGLALNDCHAEIIARRSLLRFLYTQLELYLNSKEDQKSSIFQKSERGGFRLKDTVQFHLYISTS
PCGDARIFSPHEPVLEGVRLDQQAAEPSDRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDG
VLQGERLLTMSCSDKIARWNVVGTQGSLLSIFVEPVYFSSIILGSLYHGDHLSRAMYQRISNIE
DLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDSALEVINATTGKDELGRPSRLCKHAL
YSRWMRVHGKVPPHLLRTKIIKPTTYHESKLAAKEYQAAKARLFTAFIKAGLGAWVEKPTEQDQ
FSLTP

hide sequence

RefSeq Acc Id:

XP_013220603 ⟸ XM_013365149

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDLEDEENMSSSSTDIKENRSLDIVSPKDGSAPGPGEGLQLPGGGSSGTGRKRPLEEGSNGHSR
YRLKKRRKAPGPVLPKNALMQLNEIKPGLQYTLLSQTGPVHAPLFVMSVEVNGQVFEGSGPTKK
KAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVHTDFTSDQADFPDTLFNGFETPDRVESFCMG
SNGDESLSSSGDLSLSASPVPASLAQPPLPGPPPFPPPSGKNPVMILNELRPGLKYDFLSESGE
SHAKSFVMSVVVDGQFFEGSGRNKKLAKARAAQSALATIFNLHLDQTPSRQPVPSEGLQLHLPQ
VLADAVSRLVLGKFSDLTDNFSSPHARRKVLAGVVMTTGTDVKDAKVISVSTGTKCINGEYMSD
RGLALNDCHAEIIARRSLLRFLYTQLELYLNSKEDQKSSIFQKSERGGFRLKDTVQFHLYISTS
PCGDARIFSPHEPVLEGVRLDQQAAEPSDRHPNRKARGQLRTKIESGEGTIPVRSNASIQTWDG
VLQGERLLTMSCSDKIARWNVVGTQGSLLSIFVEPVYFSSIILGSLYHGDHLSRAMYQRISNIE
DLPPLYTLNKPLLSGISNAEARQPGKAPNFSVNWTVGDSALEVINATTGKDELGRPSRLCAPPL
AADQDHQAHHLPRVQAGG

hide sequence

RefSeq Acc Id:	XP_040143067 ⟸ XM_040287133
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSSTOP00000014136 ⟸ ENSSTOT00000015795

Protein Domains

A to I editase DRBM

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000015792	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000015795.3	UniProtKB/TrEMBL
Gene3D-CATH	3.30.160.20	UniProtKB/TrEMBL
InterPro	A_deamin	UniProtKB/TrEMBL
	ADAR2_DSRM_1	UniProtKB/TrEMBL
	ADAR2_DSRM_2	UniProtKB/TrEMBL
	dsRBD_dom	UniProtKB/TrEMBL
NCBI Gene	Adarb1	ENTREZGENE
PANTHER	DOUBLE-STRANDED RNA-SPECIFIC EDITASE 1	UniProtKB/TrEMBL
	EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN	UniProtKB/TrEMBL
Pfam	A_deamin	UniProtKB/TrEMBL
	dsrm	UniProtKB/TrEMBL
PROSITE	A_DEAMIN_EDITASE	UniProtKB/TrEMBL
	DS_RBD	UniProtKB/TrEMBL
SMART	ADEAMc	UniProtKB/TrEMBL
	DSRM	UniProtKB/TrEMBL
Superfamily-SCOP	dsRNA-binding domain-like	UniProtKB/TrEMBL
UniProt	I3MQD3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2019-01-22	Adarb1	adenosine deaminase RNA specific B1		adenosine deaminase, RNA specific B1	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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