Cdc42ep3 (CDC42 effector protein 3) - Rat Genome Database

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Gene: Cdc42ep3 (CDC42 effector protein 3) Ictidomys tridecemlineatus
Analyze
Symbol: Cdc42ep3
Name: CDC42 effector protein 3
RGD ID: 12605055
Description: ENCODES a protein that exhibits small GTPase binding (inferred); INVOLVED IN positive regulation of actin filament polymerization (inferred); positive regulation of pseudopodium assembly (inferred); regulation of cell shape (inferred); ASSOCIATED WITH genetic disease (ortholog); RASopathy (ortholog); FOUND IN actin cytoskeleton (inferred); cytoplasm (inferred); endomembrane system (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629242,012,013 - 42,035,924 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936663678,469 - 701,416 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936663676,869 - 701,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Cdc42ep3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629242,012,013 - 42,035,924 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936663678,469 - 701,416 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936663676,869 - 701,416 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDC42EP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38237,641,944 - 37,672,949 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl237,641,882 - 37,738,468 (-)EnsemblGRCh38hg38GRCh38
GRCh37237,869,087 - 37,900,092 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36237,724,247 - 37,752,830 (-)NCBINCBI36Build 36hg18NCBI36
Build 34237,782,393 - 37,810,977NCBI
Celera237,711,639 - 37,740,219 (-)NCBICelera
Cytogenetic Map2p22.2NCBI
HuRef237,608,843 - 37,639,483 (-)NCBIHuRef
CHM1_1237,798,478 - 37,829,103 (-)NCBICHM1_1
T2T-CHM13v2.0237,648,900 - 37,679,907 (-)NCBIT2T-CHM13v2.0
Cdc42ep3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391779,641,152 - 79,662,520 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1779,641,156 - 79,662,520 (-)EnsemblGRCm39 Ensembl
GRCm381779,333,723 - 79,355,091 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1779,333,727 - 79,355,091 (-)EnsemblGRCm38mm10GRCm38
MGSCv371779,733,365 - 79,754,431 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361779,239,083 - 79,260,138 (-)NCBIMGSCv36mm8
Celera1783,643,319 - 83,664,470 (-)NCBICelera
Cytogenetic Map17E3NCBI
cM Map1750.3NCBI
Cdc42ep3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8621,463,081 - 21,483,553 (+)NCBIGRCr8
mRatBN7.2615,710,894 - 15,731,366 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl615,708,730 - 15,732,721 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx616,009,294 - 16,029,787 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0616,331,501 - 16,352,000 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0615,827,760 - 15,848,253 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.061,922,500 - 1,942,972 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl61,922,500 - 1,942,972 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.061,912,346 - 1,932,818 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.462,111,458 - 2,132,242 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.162,111,145 - 2,132,242 (-)NCBI
Celera615,376,813 - 15,397,267 (+)NCBICelera
Cytogenetic Map6q12NCBI
Cdc42ep3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554415,437,626 - 5,461,085 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554415,437,626 - 5,461,085 (-)NCBIChiLan1.0ChiLan1.0
CDC42EP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21288,810,902 - 88,841,486 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A88,809,369 - 88,845,460 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A37,665,482 - 37,696,817 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A38,429,213 - 38,460,283 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A38,433,075 - 38,433,839 (-)Ensemblpanpan1.1panPan2
CDC42EP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11729,949,452 - 29,973,008 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1729,950,210 - 29,973,008 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1729,763,162 - 29,786,805 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01730,599,265 - 30,622,939 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1730,599,304 - 30,603,875 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11729,825,858 - 29,849,497 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01729,892,669 - 29,916,277 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01730,107,873 - 30,131,523 (-)NCBIUU_Cfam_GSD_1.0
CDC42EP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3102,538,586 - 102,567,796 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13102,537,662 - 102,567,669 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23108,935,436 - 108,959,926 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CDC42EP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11469,709,470 - 69,738,305 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1469,736,558 - 69,737,322 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604542,215,427 - 42,246,548 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdc42ep3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473819,269,266 - 19,291,334 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473819,268,332 - 19,291,355 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000013509   ⟹   ENSSTOP00000012105
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_004936663678,469 - 701,416 (+)Ensembl
RefSeq Acc Id: XM_005336540   ⟹   XP_005336597
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629242,012,940 - 42,035,924 (+)NCBI
SpeTri2.0NW_004936663678,444 - 701,416 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021734071   ⟹   XP_021589746
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629242,012,013 - 42,035,924 (+)NCBI
SpeTri2.0NW_004936663676,869 - 701,416 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336597 (Get FASTA)   NCBI Sequence Viewer  
  XP_021589746 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012105.1
RefSeq Acc Id: XP_005336597   ⟸   XM_005336540
- UniProtKB: I3ML52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021589746   ⟸   XM_021734071
- UniProtKB: I3ML52 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012105   ⟸   ENSSTOT00000013509
Protein Domains
CRIB


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013511 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013509.2 UniProtKB/TrEMBL
InterPro Cdc42_effect UniProtKB/TrEMBL
  CRIB_dom UniProtKB/TrEMBL
NCBI Gene Cdc42ep3 ENTREZGENE
PANTHER CDC42 EFFECTOR PROTEIN 3 UniProtKB/TrEMBL
  CDC42 EFFECTOR PROTEIN BORG UniProtKB/TrEMBL
Pfam BORG_CEP UniProtKB/TrEMBL
  PBD UniProtKB/TrEMBL
PROSITE CRIB UniProtKB/TrEMBL
SMART PBD UniProtKB/TrEMBL
UniProt I3ML52 ENTREZGENE, UniProtKB/TrEMBL