Golph3 (golgi phosphoprotein 3) - Rat Genome Database

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Gene: Golph3 (golgi phosphoprotein 3) Ictidomys tridecemlineatus
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Symbol: Golph3
Name: golgi phosphoprotein 3
RGD ID: 12605018
Description: ENCODES a protein that exhibits enzyme binding (inferred); phosphatidylinositol-4-phosphate binding (inferred); INVOLVED IN asymmetric Golgi ribbon formation (inferred); cell adhesion molecule production (inferred); cell migration (inferred); ASSOCIATED WITH Developmental Disabilities (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN endosome (ortholog); Golgi apparatus (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213222,736,224 - 222,769,529 (-)NCBI
SpeTri2.0NW_0049365188,602,367 - 8,635,665 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Golph3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213222,736,224 - 222,769,529 (-)NCBI
SpeTri2.0NW_0049365188,602,367 - 8,635,665 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GOLPH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38532,124,716 - 32,174,319 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl532,124,716 - 32,174,319 (-)EnsemblGRCh38hg38GRCh38
GRCh37532,124,822 - 32,174,425 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36532,160,581 - 32,210,182 (-)NCBINCBI36hg18NCBI36
Build 34532,160,580 - 32,210,182NCBI
Celera532,006,114 - 32,055,713 (-)NCBI
Cytogenetic Map5p13.3NCBI
HuRef532,091,956 - 32,141,330 (-)NCBIHuRef
CHM1_1532,126,145 - 32,175,750 (-)NCBICHM1_1
T2T-CHM13v2.0532,238,327 - 32,287,926 (-)NCBI
Golph3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391512,319,617 - 12,351,687 (+)NCBIGRCm39mm39
GRCm39 Ensembl1512,321,536 - 12,351,677 (+)Ensembl
GRCm381512,320,488 - 12,351,601 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1512,321,450 - 12,351,591 (+)EnsemblGRCm38mm10GRCm38
MGSCv371512,251,251 - 12,281,022 (+)NCBIGRCm37mm9NCBIm37
MGSCv361512,266,221 - 12,295,992 (+)NCBImm8
Celera1512,101,257 - 12,131,024 (+)NCBICelera
Cytogenetic Map15A1NCBI
Golph3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2261,348,030 - 61,376,051 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl261,348,030 - 61,376,049 (+)Ensembl
Rnor_6.0262,360,754 - 62,388,773 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl262,360,754 - 62,388,771 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0282,299,652 - 82,327,662 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4261,789,212 - 61,817,179 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1261,717,444 - 61,745,410 (+)NCBI
Celera257,320,169 - 57,348,256 (-)NCBICelera
Cytogenetic Map2q16NCBI
Golph3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542617,980,514 - 18,017,041 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542617,980,514 - 18,017,041 (-)NCBIChiLan1.0ChiLan1.0
GOLPH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1583,540,555 - 83,598,139 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl583,536,242 - 83,596,639 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0578,157,724 - 78,215,933 (+)NCBIMhudiblu_PPA_v0panPan3
GOLPH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1475,302,580 - 75,324,086 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl475,298,111 - 75,322,768 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha474,905,544 - 74,960,831 (+)NCBI
ROS_Cfam_1.0475,788,102 - 75,843,667 (+)NCBI
UMICH_Zoey_3.1475,525,429 - 75,580,674 (+)NCBI
UNSW_CanFamBas_1.0475,655,206 - 75,710,584 (+)NCBI
UU_Cfam_GSD_1.0476,184,359 - 76,239,900 (+)NCBI
LOC110257335
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1618,367,282 - 18,416,501 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11618,367,264 - 18,416,496 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
GOLPH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1431,408,297 - 31,461,539 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl431,409,386 - 31,461,547 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607121,633,439 - 21,687,956 (-)NCBIVero_WHO_p1.0
Golph3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475922,361,405 - 22,399,861 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462475922,361,447 - 22,399,861 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005325660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005325660   ⟹   XP_005325717
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213222,736,224 - 222,769,529 (-)NCBI
SpeTri2.0NW_0049365188,602,367 - 8,635,665 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325717 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3266773 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005325717   ⟸   XM_005325660
- UniProtKB: I3MQI2 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015877 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000014212 ENTREZGENE
  ENSSTOP00000014212.2 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015875.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3630.10 UniProtKB/TrEMBL
InterPro GPP34-like UniProtKB/TrEMBL
  GPP34-like_sf UniProtKB/TrEMBL
NCBI Gene Golph3 ENTREZGENE
PANTHER PTHR12704 UniProtKB/TrEMBL
Pfam GPP34 UniProtKB/TrEMBL
UniProt I3MQI2 ENTREZGENE, UniProtKB/TrEMBL