Nipal1 (NIPA like domain containing 1) - Rat Genome Database

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Gene: Nipal1 (NIPA like domain containing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Nipal1
Name: NIPA like domain containing 1
RGD ID: 12604357
Description: INVOLVED IN magnesium ion transport (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: magnesium transporter NIPA3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528532,130,309 - 32,150,720 (-)NCBI
SpeTri2.0NW_00493648214,147,716 - 14,168,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

References

Genomics

Comparative Map Data
Nipal1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528532,130,309 - 32,150,720 (-)NCBI
SpeTri2.0NW_00493648214,147,716 - 14,168,758 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPAL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl447,914,142 - 48,040,173 (+)EnsemblGRCh38hg38GRCh38
GRCh38448,016,772 - 48,040,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37448,018,789 - 48,042,190 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36447,713,548 - 47,733,841 (+)NCBINCBI36hg18NCBI36
Celera448,467,642 - 48,487,933 (+)NCBI
Cytogenetic Map4p12NCBI
HuRef447,339,019 - 47,359,298 (+)NCBIHuRef
CHM1_1448,017,882 - 48,038,161 (+)NCBICHM1_1
Nipal1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39572,805,139 - 72,828,421 (+)NCBIGRCm39mm39
GRCm39 Ensembl572,805,138 - 72,828,421 (+)Ensembl
GRCm38572,647,796 - 72,671,078 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl572,647,795 - 72,671,078 (+)EnsemblGRCm38mm10GRCm38
MGSCv37573,039,035 - 73,062,317 (+)NCBIGRCm37mm9NCBIm37
MGSCv36572,926,931 - 72,950,213 (+)NCBImm8
Celera569,896,584 - 69,919,867 (+)NCBICelera
Cytogenetic Map5C3.2NCBI
Nipal1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21435,537,641 - 35,561,651 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1435,540,324 - 35,561,659 (-)Ensembl
Rnor_6.01438,104,027 - 38,128,038 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1438,104,047 - 38,128,024 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,914,565 - 37,938,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,965,997 - 37,990,014 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11437,969,451 - 37,993,302 (-)NCBI
Celera1434,793,332 - 34,814,626 (-)NCBICelera
Cytogenetic Map14p11NCBI
Nipal1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955443584,451 - 609,324 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955443584,451 - 608,451 (-)NCBIChiLan1.0ChiLan1.0
NIPAL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1484,838,778 - 84,862,172 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl484,838,778 - 84,862,170 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0474,106,699 - 74,130,102 (-)NCBIMhudiblu_PPA_v0panPan3
NIPAL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11343,877,377 - 43,900,871 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1343,877,393 - 43,897,671 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1343,829,924 - 43,853,246 (+)NCBI
ROS_Cfam_1.01344,477,241 - 44,500,597 (+)NCBI
UMICH_Zoey_3.11344,154,655 - 44,177,990 (+)NCBI
UNSW_CanFamBas_1.01343,686,663 - 43,709,959 (+)NCBI
UU_Cfam_GSD_1.01344,569,803 - 44,593,134 (+)NCBI
NIPAL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl837,936,847 - 37,962,908 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1837,936,812 - 37,963,492 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
NIPAL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1272,211,034 - 2,231,648 (-)NCBI
ChlSab1.1 Ensembl272,211,562 - 2,231,617 (-)Ensembl
Vero_WHO_p1.0NW_02366604748,224,804 - 48,246,768 (-)NCBI
Nipal1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476118,923,352 - 18,949,288 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021722711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000344 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_021722711   ⟹   XP_021578386
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440528532,130,309 - 32,150,720 (-)NCBI
SpeTri2.0NW_00493648214,147,716 - 14,168,758 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021578386 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3276666 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_021578386   ⟸   XM_021722711
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010605 ENTREZGENE
Ensembl Protein ENSSTOP00000009522 ENTREZGENE
NCBI Gene Nipal1 ENTREZGENE