Gdf1 (growth differentiation factor 1) - Rat Genome Database

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Gene: Gdf1 (growth differentiation factor 1) Ictidomys tridecemlineatus
Analyze
Symbol: Gdf1
Name: growth differentiation factor 1
RGD ID: 12603203
Description: INVOLVED IN endoderm development (ortholog); in utero embryonic development (ortholog); mesoderm development (ortholog); ASSOCIATED WITH congenital heart disease (ortholog); dextro-looped transposition of the great arteries (ortholog); dextro-looped transposition of the great arteries 3 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: embryonic growth/differentiation factor 1
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,918,263 - 202,920,073 (+)NCBI
SpeTri2.0NW_0049365962,467,428 - 2,469,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Gdf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118202,918,263 - 202,920,073 (+)NCBI
SpeTri2.0NW_0049365962,467,428 - 2,469,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GDF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1918,868,545 - 18,896,158 (-)EnsemblGRCh38hg38GRCh38
GRCh381918,868,545 - 18,896,158 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371918,979,354 - 19,006,967 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361918,840,354 - 18,842,116 (-)NCBINCBI36hg18NCBI36
Build 341918,840,353 - 18,867,953NCBI
Celera1918,884,162 - 18,911,776 (-)NCBI
Cytogenetic Map19p13.11NCBI
HuRef1918,543,712 - 18,569,342 (-)NCBIHuRef
CHM1_11918,979,164 - 19,006,647 (-)NCBICHM1_1
Gdf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39870,768,425 - 70,784,242 (+)NCBIGRCm39mm39
GRCm39 Ensembl870,768,425 - 70,784,242 (+)Ensembl
GRCm39 Ensembl870,782,467 - 70,784,237 (+)Ensembl
GRCm38870,315,775 - 70,331,592 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl870,315,775 - 70,331,592 (+)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl870,329,817 - 70,331,587 (+)EnsemblGRCm38mm10GRCm38
MGSCv37872,839,674 - 72,855,487 (+)NCBIGRCm37mm9NCBIm37
MGSCv36873,252,436 - 73,260,555 (+)NCBImm8
Celera872,872,244 - 72,888,065 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
Gdf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21619,097,309 - 19,112,519 (-)NCBI
Rnor_6.0 Ensembl1620,845,576 - 20,860,767 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01620,845,580 - 20,860,789 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01620,698,122 - 20,712,564 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41619,580,807 - 19,596,415 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11619,580,804 - 19,583,914 (-)NCBI
Celera1619,287,577 - 19,302,834 (-)NCBICelera
Cytogenetic Map16p14NCBI
GDF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12044,233,304 - 44,234,072 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2044,147,104 - 44,148,882 (+)NCBI
ROS_Cfam_1.02044,718,632 - 44,720,410 (+)NCBI
UMICH_Zoey_3.12043,955,914 - 43,957,692 (+)NCBI
UNSW_CanFamBas_1.02044,366,109 - 44,367,883 (+)NCBI
UU_Cfam_GSD_1.02044,641,589 - 44,643,367 (+)NCBI
GDF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl258,951,726 - 58,974,672 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1258,972,918 - 58,976,294 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2258,560,688 - 58,564,421 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GDF1
(Chlorocebus sabaeus - African green monkey)
No map positions available.
Gdf1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249081,935,525 - 1,937,012 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005332974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000177 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005332974   ⟹   XP_005333031
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024405118202,918,263 - 202,920,073 (+)NCBI
SpeTri2.0NW_0049365962,467,428 - 2,469,213 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005333031 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005333031   ⟸   XM_005332974
- UniProtKB: I3NGF8 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
TGF_BETA_2


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020887 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000023455 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000030124 UniProtKB/TrEMBL
Gene3D-CATH 2.10.90.10 UniProtKB/TrEMBL
InterPro Cystine-knot_cytokine UniProtKB/TrEMBL
  TGF-b_C UniProtKB/TrEMBL
  TGF-beta-rel UniProtKB/TrEMBL
  TGFb_CS UniProtKB/TrEMBL
NCBI Gene Gdf1 ENTREZGENE
PANTHER PTHR11848 UniProtKB/TrEMBL
Pfam TGF_beta UniProtKB/TrEMBL
PROSITE TGF_BETA_1 UniProtKB/TrEMBL
  TGF_BETA_2 UniProtKB/TrEMBL
SMART TGFB UniProtKB/TrEMBL
Superfamily-SCOP SSF57501 UniProtKB/TrEMBL
UniProt I3NGF8 ENTREZGENE, UniProtKB/TrEMBL