Apoh (apolipoprotein H) - Rat Genome Database

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Gene: Apoh (apolipoprotein H) Ictidomys tridecemlineatus
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Symbol: Apoh
Name: apolipoprotein H
RGD ID: 12601641
Description: ENCODES a protein that exhibits identical protein binding (ortholog); lipid binding (ortholog); lipoprotein lipase activator activity (ortholog); INVOLVED IN aging (ortholog); animal organ regeneration (ortholog); blood coagulation (ortholog); PARTICIPATES IN coagulation cascade pathway; ASSOCIATED WITH antiphospholipid syndrome (ortholog); arteriosclerosis (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cell surface (ortholog); chylomicron (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: beta-2-glycoprotein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560212,499,435 - 12,511,134 (-)NCBI
SpeTri2.0NW_0049365416,683,483 - 6,695,094 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Apoh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560212,499,435 - 12,511,134 (-)NCBI
SpeTri2.0NW_0049365416,683,483 - 6,695,094 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
APOH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1766,212,033 - 66,256,525 (-)EnsemblGRCh38hg38GRCh38
GRCh381766,212,033 - 66,229,415 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371764,208,151 - 64,225,533 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361761,638,609 - 61,656,018 (-)NCBINCBI36hg18NCBI36
Build 341761,638,613 - 61,655,992NCBI
Celera1760,780,183 - 60,797,591 (-)NCBI
Cytogenetic Map17q24.2NCBI
HuRef1759,599,926 - 59,617,004 (-)NCBIHuRef
CHM1_11764,272,419 - 64,289,828 (-)NCBICHM1_1
Apoh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911108,286,123 - 108,305,222 (+)NCBIGRCm39mm39
GRCm39 Ensembl11108,234,180 - 108,305,222 (+)Ensembl
GRCm3811108,395,297 - 108,414,396 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11108,343,354 - 108,414,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711108,256,611 - 108,275,710 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611108,211,403 - 108,230,481 (+)NCBImm8
Celera11120,134,821 - 120,148,689 (+)NCBICelera
Cytogenetic Map11E1NCBI
cM Map1171.8NCBI
Apoh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21093,342,435 - 93,356,334 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1093,310,977 - 93,356,329 (+)Ensembl
Rnor_6.01096,640,013 - 96,653,939 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1096,639,924 - 96,653,938 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01096,364,217 - 96,378,118 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41097,725,088 - 97,739,213 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11097,739,457 - 97,753,582 (+)NCBI
Celera1092,007,324 - 92,020,973 (+)NCBICelera
Cytogenetic Map10q32.1NCBI
Apoh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554785,610,164 - 5,626,020 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554785,612,258 - 5,626,061 (-)NCBIChiLan1.0ChiLan1.0
APOH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11765,365,250 - 65,382,483 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1765,365,250 - 65,382,483 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01760,154,389 - 60,171,762 (-)NCBIMhudiblu_PPA_v0panPan3
APOH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1914,082,648 - 14,095,186 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl914,082,541 - 14,095,185 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha914,976,443 - 14,988,978 (+)NCBI
ROS_Cfam_1.0915,744,714 - 15,757,283 (+)NCBI
UMICH_Zoey_3.1914,691,324 - 14,703,853 (+)NCBI
UNSW_CanFamBas_1.0912,829,414 - 12,841,962 (-)NCBI
UU_Cfam_GSD_1.0912,830,254 - 12,842,800 (-)NCBI
APOH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1212,827,201 - 12,839,175 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11212,827,195 - 12,839,172 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21213,142,347 - 13,154,323 (-)NCBISscrofa10.2Sscrofa10.2susScr3
APOH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11655,209,142 - 55,231,176 (+)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607726,257,256 - 26,290,880 (+)NCBIVero_WHO_p1.0
Apoh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248702,082,050 - 2,096,220 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005328232 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005328232   ⟹   XP_005328289
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560212,499,435 - 12,511,134 (-)NCBI
SpeTri2.0NW_0049365416,683,483 - 6,695,094 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005328289 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3268622 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005328289   ⟸   XM_005328232
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000026343 ENTREZGENE
Ensembl Protein ENSSTOP00000023576 ENTREZGENE
NCBI Gene Apoh ENTREZGENE