Omd (osteomodulin) - Rat Genome Database

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Gene: Omd (osteomodulin) Ictidomys tridecemlineatus
Analyze
Symbol: Omd
Name: osteomodulin
RGD ID: 12599760
Description: ASSOCIATED WITH genetic disease (ortholog); hereditary sensory and autonomic neuropathy type 1 (ortholog); hereditary sensory neuropathy (ortholog); FOUND IN extracellular matrix (inferred); extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049447,837,766 - 7,846,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,053,879 - 2,063,011 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,054,109 - 2,056,871 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Omd
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049447,837,766 - 7,846,558 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364872,053,879 - 2,063,011 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364872,054,109 - 2,056,871 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
OMD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38992,412,380 - 92,424,471 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl992,412,380 - 92,424,471 (-)EnsemblGRCh38hg38GRCh38
GRCh37995,174,662 - 95,186,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36994,216,359 - 94,226,381 (-)NCBINCBI36Build 36hg18NCBI36
Build 34992,256,092 - 92,266,115NCBI
Celera965,618,561 - 65,628,868 (-)NCBICelera
Cytogenetic Map9q22.31NCBI
HuRef964,853,990 - 64,864,296 (-)NCBIHuRef
CHM1_1995,322,965 - 95,333,277 (-)NCBICHM1_1
T2T-CHM13v2.09104,578,877 - 104,590,965 (-)NCBIT2T-CHM13v2.0
Omd
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391349,735,938 - 49,746,088 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1349,735,938 - 49,746,298 (+)EnsemblGRCm39 Ensembl
GRCm381349,582,462 - 49,592,612 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1349,582,462 - 49,592,822 (+)EnsemblGRCm38mm10GRCm38
MGSCv371349,678,116 - 49,687,978 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361349,594,686 - 49,604,546 (+)NCBIMGSCv36mm8
Celera1350,673,244 - 50,683,110 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1325.33NCBI
Omd
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81715,266,646 - 15,274,870 (-)NCBIGRCr8
mRatBN7.21715,060,217 - 15,068,441 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1715,060,217 - 15,068,441 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1714,947,522 - 14,955,724 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01716,552,578 - 16,560,780 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01714,874,313 - 14,882,515 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01715,476,100 - 15,484,324 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1715,475,710 - 15,484,269 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1714,635,184 - 14,637,832 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01716,687,912 - 16,695,860 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41721,015,178 - 21,023,126 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11721,015,180 - 21,023,126 (-)NCBI
Celera1714,791,433 - 14,798,980 (-)NCBICelera
Cytogenetic Map17p14NCBI
Omd
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555155,360,569 - 5,363,739 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555155,355,438 - 5,363,739 (+)NCBIChiLan1.0ChiLan1.0
OMD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21147,004,000 - 47,016,129 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1947,006,419 - 47,018,936 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0963,537,522 - 63,547,592 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1991,610,878 - 91,620,538 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl991,611,158 - 91,613,668 (-)Ensemblpanpan1.1panPan2
OMD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1198,923,507 - 98,933,751 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl198,929,274 - 98,931,219 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha199,317,349 - 99,327,591 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0199,540,330 - 99,550,572 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl199,540,378 - 99,548,286 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1199,153,410 - 99,163,649 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0198,888,674 - 98,898,911 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0199,645,439 - 99,655,679 (+)NCBIUU_Cfam_GSD_1.0
OMD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl342,142,658 - 42,154,583 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1342,142,603 - 42,155,032 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2343,331,046 - 43,339,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
OMD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112102,938,402 - 102,948,626 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl12102,937,688 - 102,948,369 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603891,210,596 - 91,213,743 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Omd
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248683,930,661 - 3,939,614 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248683,930,861 - 3,939,380 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005320867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000015220   ⟹   ENSSTOP00000013639
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364872,053,879 - 2,063,011 (-)Ensembl
RefSeq Acc Id: XM_005320867   ⟹   XP_005320924
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049447,837,766 - 7,846,558 (-)NCBI
SpeTri2.0NW_0049364872,054,109 - 2,056,871 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320924 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000013639.3
GenBank Protein KAG3293590 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005320924   ⟸   XM_005320867
- UniProtKB: I3MPD6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000013639   ⟸   ENSSTOT00000015220
Protein Domains
LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000015221 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000015220.3 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene Omd ENTREZGENE
PANTHER AGAP008170-PA UniProtKB/TrEMBL
  PTHR45712:SF3 UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
PROSITE LRR UniProtKB/TrEMBL
SMART LRR_BAC UniProtKB/TrEMBL
  LRR_TYP UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt I3MPD6 ENTREZGENE, UniProtKB/TrEMBL