Slc35f6 (solute carrier family 35 member F6) - Rat Genome Database

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Gene: Slc35f6 (solute carrier family 35 member F6) Ictidomys tridecemlineatus
Analyze
Symbol: Slc35f6
Name: solute carrier family 35 member F6
RGD ID: 12599583
Description: ENCODES a protein that exhibits transmembrane transporter activity (inferred); INVOLVED IN negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway (inferred); positive regulation of cell population proliferation (inferred); transmembrane transport (inferred); ASSOCIATED WITH genetic disease (ortholog); Tatton-Brown-Rahman syndrome (ortholog); FOUND IN cytosol (inferred); intracellular membrane-bounded organelle (inferred); lysosomal membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,092,294 - 65,108,035 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,731,058 - 5,760,987 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,731,106 - 5,747,270 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc35f6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629265,092,294 - 65,108,035 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364935,731,058 - 5,760,987 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364935,731,106 - 5,747,270 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35F6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38226,764,284 - 26,781,231 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl226,764,284 - 26,781,231 (+)EnsemblGRCh38hg38GRCh38
GRCh37226,987,152 - 27,004,099 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36226,840,646 - 26,857,603 (+)NCBINCBI36Build 36hg18NCBI36
Build 34226,898,798 - 26,914,715NCBI
Celera226,833,199 - 26,850,160 (+)NCBICelera
Cytogenetic Map2p23.3NCBI
HuRef226,728,866 - 26,745,828 (+)NCBIHuRef
CHM1_1226,916,870 - 26,933,831 (+)NCBICHM1_1
T2T-CHM13v2.0226,805,872 - 26,822,820 (+)NCBIT2T-CHM13v2.0
Slc35f6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39530,805,272 - 30,817,073 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl530,805,277 - 30,817,073 (+)EnsemblGRCm39 Ensembl
GRCm38530,647,939 - 30,659,729 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl530,647,933 - 30,659,729 (+)EnsemblGRCm38mm10GRCm38
MGSCv37530,950,312 - 30,962,102 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36530,924,544 - 30,936,310 (+)NCBIMGSCv36mm8
Celera528,126,432 - 28,138,222 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map516.74NCBI
Slc35f6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8631,445,738 - 31,457,580 (-)NCBIGRCr8
mRatBN7.2625,725,822 - 25,737,720 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl625,725,819 - 25,737,730 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx626,018,501 - 26,030,325 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0626,334,378 - 26,346,202 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0625,814,017 - 25,825,856 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0627,095,144 - 27,106,982 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl627,095,141 - 27,107,030 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0636,910,710 - 36,922,612 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4625,708,502 - 25,720,340 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1625,711,455 - 25,723,293 (-)NCBI
Celera625,209,088 - 25,220,923 (-)NCBICelera
Cytogenetic Map6q14NCBI
Slc35f6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554698,773,989 - 8,787,549 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554698,774,225 - 8,787,549 (+)NCBIChiLan1.0ChiLan1.0
SLC35F6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21299,733,643 - 99,751,576 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A99,737,570 - 99,755,558 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A26,762,690 - 26,780,492 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A26,854,078 - 26,871,820 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A26,854,078 - 26,871,820 (+)Ensemblpanpan1.1panPan2
SLC35F6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11720,793,821 - 20,807,987 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1720,793,964 - 20,806,775 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1720,687,739 - 20,714,321 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01721,115,081 - 21,141,661 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1721,115,127 - 21,131,879 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11720,801,940 - 20,828,509 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01720,813,289 - 20,839,902 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01720,859,303 - 20,885,884 (+)NCBIUU_Cfam_GSD_1.0
SLC35F6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3112,280,661 - 112,296,865 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13112,280,654 - 112,296,874 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23119,279,988 - 119,296,212 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35F6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11480,853,736 - 80,869,946 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1480,850,555 - 80,869,894 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604531,275,651 - 31,291,136 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35f6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247388,875,438 - 8,888,571 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247388,875,717 - 8,890,439 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005322558 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000005825   ⟹   ENSSTOP00000005211
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364935,731,058 - 5,747,308 (-)Ensembl
RefSeq Acc Id: ENSSTOT00000030324   ⟹   ENSSTOP00000028360
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364935,731,058 - 5,760,987 (-)Ensembl
RefSeq Acc Id: XM_005322558   ⟹   XP_005322615
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629265,092,294 - 65,108,035 (+)NCBI
SpeTri2.0NW_0049364935,731,106 - 5,747,270 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005322615 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000005211.2
  ENSSTOP00000028360.1
GenBank Protein KAG3267734 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005322615   ⟸   XM_005322558
- UniProtKB: I3M6R3 (UniProtKB/TrEMBL),   A0A287D4C0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000028360   ⟸   ENSSTOT00000030324
RefSeq Acc Id: ENSSTOP00000005211   ⟸   ENSSTOT00000005825


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000005833 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000005825.3 UniProtKB/TrEMBL
  ENSSTOT00000030324.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.3730.20 UniProtKB/TrEMBL
InterPro SLC35_F1/F2/F6 UniProtKB/TrEMBL
  UCP036436 UniProtKB/TrEMBL
NCBI Gene Slc35f6 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 MEMBER F6 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam SLC35F UniProtKB/TrEMBL
PIRSF UCP036436 UniProtKB/TrEMBL
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt A0A287D4C0 ENTREZGENE, UniProtKB/TrEMBL
  I3M6R3 ENTREZGENE, UniProtKB/TrEMBL