Chst3 (carbohydrate sulfotransferase 3) - Rat Genome Database

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Gene: Chst3 (carbohydrate sulfotransferase 3) Ictidomys tridecemlineatus
Analyze
Symbol: Chst3
Name: carbohydrate sulfotransferase 3
RGD ID: 12598156
Description: ENCODES a protein that exhibits proteoglycan sulfotransferase activity (ortholog); INVOLVED IN chondroitin sulfate biosynthetic process (ortholog); peripheral nervous system axon regeneration (ortholog); response to axon injury (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); combined saposin deficiency (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721358,371,731 - 58,407,387 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365216,863,642 - 6,900,041 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365216,864,456 - 6,900,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chst3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721358,371,731 - 58,407,387 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365216,863,642 - 6,900,041 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365216,864,456 - 6,900,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381071,964,395 - 72,013,558 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1071,964,395 - 72,013,558 (+)EnsemblGRCh38hg38GRCh38
GRCh371073,724,153 - 73,773,316 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,394,126 - 73,443,318 (+)NCBINCBI36Build 36hg18NCBI36
Build 341073,394,125 - 73,443,318NCBI
Celera1067,007,692 - 67,056,893 (+)NCBICelera
Cytogenetic Map10q22.1NCBI
HuRef1067,718,863 - 67,768,083 (+)NCBIHuRef
CHM1_11074,006,249 - 74,055,464 (+)NCBICHM1_1
T2T-CHM13v2.01072,835,220 - 72,884,391 (+)NCBIT2T-CHM13v2.0
Chst3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,017,349 - 60,057,936 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1060,017,354 - 60,055,082 (-)EnsemblGRCm39 Ensembl
GRCm381060,181,527 - 60,222,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,181,532 - 60,219,260 (-)EnsemblGRCm38mm10GRCm38
MGSCv371059,644,275 - 59,682,008 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361059,576,891 - 59,584,064 (-)NCBIMGSCv36mm8
Celera1061,277,814 - 61,316,112 (-)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1029.7NCBI
Chst3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82028,657,308 - 28,694,976 (-)NCBIGRCr8
mRatBN7.22028,114,386 - 28,152,046 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2028,114,404 - 28,121,807 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2029,133,379 - 29,135,921 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02028,519,672 - 28,522,214 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02029,262,146 - 29,264,688 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02029,731,828 - 29,768,656 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2029,731,816 - 29,738,506 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02031,532,769 - 31,569,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,480,448 - 27,482,990 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12027,494,247 - 27,496,790 (-)NCBI
Celera2029,558,419 - 29,560,961 (-)NCBICelera
Cytogenetic Map20q11NCBI
Chst3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543719,563,088 - 19,569,889 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543719,563,645 - 19,605,747 (-)NCBIChiLan1.0ChiLan1.0
CHST3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2884,107,391 - 84,156,788 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11084,112,712 - 84,162,115 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01068,427,305 - 68,476,512 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11070,951,211 - 71,000,022 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1070,951,190 - 70,994,936 (+)Ensemblpanpan1.1panPan2
CHST3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1422,668,430 - 22,699,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl422,691,336 - 22,694,254 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha422,801,236 - 22,835,722 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0422,946,343 - 22,980,845 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl422,973,213 - 22,975,930 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1422,846,108 - 22,880,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0423,046,351 - 23,080,822 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0423,400,019 - 23,434,552 (+)NCBIUU_Cfam_GSD_1.0
CHST3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,850,931 - 74,891,520 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,850,931 - 74,891,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,739,187 - 80,779,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,292,705 - 59,295,821 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl959,293,158 - 59,300,866 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604819,934,549 - 19,979,113 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chst3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247545,829,546 - 5,831,941 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247545,800,240 - 5,832,290 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026843   ⟹   ENSSTOP00000018342
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365216,863,642 - 6,900,041 (-)Ensembl
RefSeq Acc Id: XM_040272181   ⟹   XP_040128115
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721358,371,731 - 58,407,218 (-)NCBI
RefSeq Acc Id: XM_040272182   ⟹   XP_040128116
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721358,371,731 - 58,407,218 (-)NCBI
RefSeq Acc Id: XM_040272183   ⟹   XP_040128117
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721358,371,731 - 58,407,387 (-)NCBI
RefSeq Acc Id: XM_040272184   ⟹   XP_040128118
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721358,371,731 - 58,404,609 (-)NCBI
RefSeq Acc Id: XM_040272185   ⟹   XP_040128119
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721358,371,731 - 58,382,359 (-)NCBI
RefSeq Acc Id: XM_040272186   ⟹   XP_040128120
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721358,371,731 - 58,407,337 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040128117   ⟸   XM_040272183
- Peptide Label: isoform X2
- UniProtKB: I3N1U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128120   ⟸   XM_040272186
- Peptide Label: isoform X2
- UniProtKB: I3N1U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128116   ⟸   XM_040272182
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040128115   ⟸   XM_040272181
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040128118   ⟸   XM_040272184
- Peptide Label: isoform X2
- UniProtKB: I3N1U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128119   ⟸   XM_040272185
- Peptide Label: isoform X2
- UniProtKB: I3N1U6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000018342   ⟸   ENSSTOT00000026843
Protein Domains
Sulfotransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027962 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026843.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene Chst3 ENTREZGENE
PANTHER CARBOHYDRATE SULFOTRANSFERASE UniProtKB/TrEMBL
  CARBOHYDRATE SULFOTRANSFERASE 3 UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3N1U6 ENTREZGENE, UniProtKB/TrEMBL