Chst3 (carbohydrate sulfotransferase 3) - Rat Genome Database
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Gene: Chst3 (carbohydrate sulfotransferase 3) Ictidomys tridecemlineatus
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Symbol: Chst3
Name: carbohydrate sulfotransferase 3
RGD ID: 12598156
Description: ENCODES a protein that exhibits chondroitin 6-sulfotransferase activity (ortholog); proteoglycan sulfotransferase activity (ortholog); INVOLVED IN chondroitin sulfate biosynthetic process (ortholog); peripheral nervous system axon regeneration (ortholog); positive regulation of cellular component movement (ortholog); ASSOCIATED WITH bone development disease (ortholog); Larsen syndrome (ortholog); Larsen-like syndrome B3GAT3 type (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365216,864,456 - 6,900,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Chst3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365216,864,456 - 6,900,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHST3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1071,964,395 - 72,013,558 (+)EnsemblGRCh38hg38GRCh38
GRCh381071,964,395 - 72,013,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371073,724,153 - 73,773,316 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh371073,724,120 - 73,773,322 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361073,394,126 - 73,443,318 (+)NCBINCBI36hg18NCBI36
Build 341073,394,125 - 73,443,318NCBI
Celera1067,007,692 - 67,056,893 (+)NCBI
Cytogenetic Map10q22.1NCBI
HuRef1067,718,863 - 67,768,083 (+)NCBIHuRef
CHM1_11074,006,249 - 74,055,464 (+)NCBICHM1_1
Chst3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391060,017,349 - 60,057,936 (-)NCBIGRCm39mm39
GRCm381060,181,527 - 60,222,114 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1060,181,532 - 60,219,260 (-)EnsemblGRCm38mm10GRCm38
MGSCv371059,644,275 - 59,682,008 (-)NCBIGRCm37mm9NCBIm37
MGSCv361059,576,891 - 59,584,064 (-)NCBImm8
Celera1061,277,814 - 61,316,112 (-)NCBICelera
Cytogenetic Map10B4NCBI
Chst3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22028,114,387 - 28,152,046 (-)NCBI
Rnor_6.0 Ensembl2029,731,816 - 29,738,506 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.02029,731,828 - 29,768,656 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.02031,532,769 - 31,569,063 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42027,480,448 - 27,482,990 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12027,494,247 - 27,496,790 (-)NCBI
Celera2029,558,419 - 29,560,961 (-)NCBICelera
Cytogenetic Map20q11NCBI
Chst3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543719,563,088 - 19,569,889 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543719,563,645 - 19,605,747 (-)NCBIChiLan1.0ChiLan1.0
CHST3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11070,951,211 - 71,000,022 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1070,951,190 - 70,994,936 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01068,427,305 - 68,476,512 (+)NCBIMhudiblu_PPA_v0panPan3
CHST3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl422,691,336 - 22,694,254 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1422,668,430 - 22,699,157 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CHST3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1474,850,931 - 74,891,529 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11474,850,931 - 74,891,527 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21480,739,187 - 80,779,620 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CHST3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1959,292,705 - 59,295,821 (-)NCBI
ChlSab1.1 Ensembl959,293,158 - 59,300,866 (-)Ensembl
Chst3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247545,800,240 - 5,832,290 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_021726759   ⟹   XP_021582434
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365216,864,456 - 6,899,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726760   ⟹   XP_021582435
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365216,864,456 - 6,899,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726761   ⟹   XP_021582436
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365216,867,900 - 6,899,751 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726762   ⟹   XP_021582437
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365216,864,456 - 6,900,122 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726763   ⟹   XP_021582438
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365216,864,456 - 6,900,122 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021726764   ⟹   XP_021582439
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365216,864,456 - 6,899,376 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_021582438   ⟸   XM_021726763
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021582437   ⟸   XM_021726762
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_021582434   ⟸   XM_021726759
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021582435   ⟸   XM_021726760
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021582439   ⟸   XM_021726764
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021582436   ⟸   XM_021726761
- Peptide Label: isoform X2
- Sequence:
Protein Domains
Sulfotransfer_1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027962 UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000018342 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026843 UniProtKB/TrEMBL
InterPro Carbohydrate_sulfotransferase UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene Chst3 ENTREZGENE
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
PIRSF Carbohydrate_sulfotransferase UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3N1U6_ICTTR UniProtKB/TrEMBL