Sf1 (splicing factor 1) - Rat Genome Database

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Gene: Sf1 (splicing factor 1) Ictidomys tridecemlineatus
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Symbol: Sf1
Name: splicing factor 1
RGD ID: 12597424
Description: ENCODES a protein that exhibits identical protein binding (inferred); metal ion binding (inferred); mRNA binding (inferred); INVOLVED IN Leydig cell differentiation (ortholog); male sex determination (ortholog); negative regulation of smooth muscle cell proliferation (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); genetic disease (ortholog); glycogen storage disease V (ortholog); FOUND IN spliceosomal complex (ortholog); U2AF complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: splicing factor 1, transcript variant X1; splicing factor 1, transcript variant X2; splicing factor 1, transcript variant X3; splicing factor 1, transcript variant X4; splicing factor 1, transcript variant X5; splicing factor 1, transcript variant X6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,091,417 - 8,104,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,533,795 - 4,546,853 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,533,664 - 4,546,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nuclear body  (IEA)
nucleoplasm  (IEA)
nucleus  (IEA)
spliceosomal complex  (IEA,ISO)
U2AF complex  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Sf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049478,091,417 - 8,104,506 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365994,533,795 - 4,546,853 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365994,533,664 - 4,546,857 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381164,764,606 - 64,778,542 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1164,764,606 - 64,778,786 (-)EnsemblGRCh38hg38GRCh38
GRCh371164,532,078 - 64,546,014 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361164,288,654 - 64,302,817 (-)NCBINCBI36Build 36hg18NCBI36
Build 341164,288,653 - 64,302,817NCBI
Celera1161,858,574 - 61,872,815 (-)NCBICelera
Cytogenetic Map11q13.1NCBI
HuRef1160,858,921 - 60,873,339 (-)NCBIHuRef
CHM1_11164,415,846 - 64,430,091 (-)NCBICHM1_1
T2T-CHM13v2.01164,757,911 - 64,771,848 (-)NCBIT2T-CHM13v2.0
Sf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39196,413,952 - 6,428,060 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl196,413,720 - 6,428,060 (+)EnsemblGRCm39 Ensembl
GRCm38196,363,673 - 6,378,038 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl196,363,690 - 6,378,030 (+)EnsemblGRCm38mm10GRCm38
MGSCv37196,363,690 - 6,378,038 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36196,364,088 - 6,376,425 (+)NCBIMGSCv36mm8
Celera196,236,708 - 6,251,056 (+)NCBICelera
Cytogenetic Map19ANCBI
cM Map194.48NCBI
Sf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81213,090,256 - 213,112,688 (+)NCBIGRCr8
mRatBN7.21203,670,016 - 203,683,432 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1203,670,018 - 203,684,330 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,018,848 - 212,032,153 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01219,115,356 - 219,128,639 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,806,411 - 211,819,694 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01221,735,512 - 221,749,216 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1221,735,517 - 221,749,086 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01228,723,282 - 228,737,009 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41209,146,177 - 209,159,459 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11209,312,189 - 209,313,441 (+)NCBI
Celera1201,203,443 - 201,216,725 (+)NCBICelera
Cytogenetic Map1q43NCBI
Sf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542220,391,722 - 20,551,870 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542220,391,340 - 20,406,555 (+)NCBIChiLan1.0ChiLan1.0
SF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2965,990,503 - 66,006,673 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11167,033,499 - 67,048,030 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01160,120,126 - 60,134,279 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11163,461,318 - 63,473,350 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1163,461,318 - 63,473,355 (-)Ensemblpanpan1.1panPan2
SF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11852,380,058 - 52,393,833 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1852,380,211 - 52,393,048 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1850,987,426 - 51,001,160 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01853,421,292 - 53,435,068 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1853,421,043 - 53,435,063 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11852,516,258 - 52,529,989 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01852,102,165 - 52,115,924 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01852,886,303 - 52,900,036 (+)NCBIUU_Cfam_GSD_1.0
SF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl27,391,383 - 7,404,948 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.127,391,295 - 7,404,693 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.226,522,689 - 6,537,534 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.119,456,524 - 9,470,920 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl19,456,971 - 9,472,396 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038106,845,714 - 106,860,060 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476721,606,065 - 21,621,830 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476721,606,059 - 21,621,831 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000009794   ⟹   ENSSTOP00000008782
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365994,533,795 - 4,546,853 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000036196   ⟹   ENSSTOP00000031783
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365994,533,795 - 4,546,853 (+)Ensembl
RefSeq Acc Id: XM_005333476   ⟹   XP_005333533
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,418 - 8,103,341 (+)NCBI
SpeTri2.0NW_0049365994,533,765 - 4,546,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005333477   ⟹   XP_005333534
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,418 - 8,103,341 (+)NCBI
SpeTri2.0NW_0049365994,533,766 - 4,546,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005333479   ⟹   XP_005333536
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,418 - 8,104,506 (+)NCBI
SpeTri2.0NW_0049365994,533,664 - 4,546,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013362024   ⟹   XP_013217478
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,419 - 8,104,506 (+)NCBI
SpeTri2.0NW_0049365994,533,766 - 4,546,857 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040284153   ⟹   XP_040140087
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,418 - 8,104,506 (+)NCBI
RefSeq Acc Id: XM_040284154   ⟹   XP_040140088
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,417 - 8,103,341 (+)NCBI
RefSeq Acc Id: XM_040284155   ⟹   XP_040140089
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,417 - 8,103,341 (+)NCBI
RefSeq Acc Id: XM_040284156   ⟹   XP_040140090
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,418 - 8,104,506 (+)NCBI
RefSeq Acc Id: XM_040284157   ⟹   XP_040140091
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244049478,091,417 - 8,104,506 (+)NCBI
RefSeq Acc Id: XP_005333534   ⟸   XM_005333477
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005333536   ⟸   XM_005333479
- Peptide Label: isoform X3
- UniProtKB: A0A287DE08 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013217478   ⟸   XM_013362024
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005333533   ⟸   XM_005333476
- Peptide Label: isoform X1
- UniProtKB: I3ME85 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040140091   ⟸   XM_040284157
- Peptide Label: isoform X9
- UniProtKB: A0A287DE08 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140088   ⟸   XM_040284154
- Peptide Label: isoform X6
- UniProtKB: I3ME85 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140089   ⟸   XM_040284155
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040140090   ⟸   XM_040284156
- Peptide Label: isoform X8
- UniProtKB: A0A287DCH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040140087   ⟸   XM_040284153
- Peptide Label: isoform X5
- UniProtKB: A0A287DCH6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000031783   ⟸   ENSSTOT00000036196
RefSeq Acc Id: ENSSTOP00000008782   ⟸   ENSSTOT00000009794
Protein Domains
CCHC-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009790 Ensembl, UniProtKB/TrEMBL
  ENSSTOG00000024353 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009794.3 UniProtKB/TrEMBL
  ENSSTOT00000023913.2 UniProtKB/TrEMBL
  ENSSTOT00000036196.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/TrEMBL
  6.10.140.1790 UniProtKB/TrEMBL
InterPro BBP-like UniProtKB/TrEMBL
  KH_dom UniProtKB/TrEMBL
  KH_dom_type_1 UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/TrEMBL
  SF1-HH UniProtKB/TrEMBL
  SF1-HH_sf UniProtKB/TrEMBL
  Znf_CCHC UniProtKB/TrEMBL
NCBI Gene Sf1 ENTREZGENE
PANTHER PTHR11208 UniProtKB/TrEMBL
  PTHR11208:SF45 UniProtKB/TrEMBL
Pfam KH_1 UniProtKB/TrEMBL
  SF1-HH UniProtKB/TrEMBL
  zf-CCHC UniProtKB/TrEMBL
PROSITE KH_TYPE_1 UniProtKB/TrEMBL
  ZF_CCHC UniProtKB/TrEMBL
SMART SM00322 UniProtKB/TrEMBL
  ZnF_C2HC UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/TrEMBL
UniProt A0A287DCH6 ENTREZGENE, UniProtKB/TrEMBL
  A0A287DE08 ENTREZGENE, UniProtKB/TrEMBL
  I3ME85 ENTREZGENE, UniProtKB/TrEMBL