Atp2c2 (ATPase secretory pathway Ca2+ transporting 2) - Rat Genome Database

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Gene: Atp2c2 (ATPase secretory pathway Ca2+ transporting 2) Ictidomys tridecemlineatus
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Symbol: Atp2c2
Name: ATPase secretory pathway Ca2+ transporting 2
RGD ID: 12596867
Description: ENCODES a protein that exhibits ATP binding (inferred); ATP hydrolysis activity (inferred); P-type calcium transporter activity (inferred); INVOLVED IN mammary gland epithelium development (ortholog); positive regulation of calcium ion import (ortholog); protein localization to plasma membrane (ortholog); PARTICIPATES IN calcium transport pathway; calcium/calcium-mediated signaling pathway; ASSOCIATED WITH persistent fetal circulation syndrome (ortholog); FOUND IN cytoplasmic side of plasma membrane (inferred); cytoplasmic vesicle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: calcium-transporting ATPase type 2C member 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,751,111 - 27,798,901 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366413,498,693 - 3,547,968 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366413,498,693 - 3,547,968 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Atp2c2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934927,751,111 - 27,798,901 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366413,498,693 - 3,547,968 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366413,498,693 - 3,547,968 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP2C2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381684,368,538 - 84,464,187 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1684,368,527 - 84,464,187 (+)EnsemblGRCh38hg38GRCh38
GRCh371684,402,144 - 84,497,793 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361682,959,634 - 83,055,294 (+)NCBINCBI36Build 36hg18NCBI36
Celera1668,704,219 - 68,799,880 (+)NCBICelera
Cytogenetic Map16q24.1NCBI
HuRef1670,154,815 - 70,250,533 (+)NCBIHuRef
CHM1_11685,813,737 - 85,909,368 (+)NCBICHM1_1
T2T-CHM13v2.01690,434,936 - 90,530,568 (+)NCBIT2T-CHM13v2.0
Atp2c2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398120,426,748 - 120,484,457 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8120,426,748 - 120,484,456 (+)EnsemblGRCm39 Ensembl
GRCm388119,700,009 - 119,757,718 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8119,700,009 - 119,757,717 (+)EnsemblGRCm38mm10GRCm38
MGSCv378122,223,909 - 122,281,618 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368122,584,182 - 122,643,695 (+)NCBIMGSCv36mm8
Celera8123,917,258 - 123,973,935 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map868.21NCBI
Atp2c2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81964,662,729 - 64,719,998 (+)NCBIGRCr8
mRatBN7.21947,754,120 - 47,811,369 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1947,754,120 - 47,811,368 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1954,548,443 - 54,605,713 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01955,229,178 - 55,286,443 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01957,442,334 - 57,499,435 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01952,347,480 - 52,404,608 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1952,347,580 - 52,404,607 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01963,095,398 - 63,150,054 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1947,012,092 - 47,068,905 (+)NCBICelera
Cytogenetic Map19q12NCBI
Atp2c2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495554147,768 - 94,878 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495554147,803 - 95,074 (+)NCBIChiLan1.0ChiLan1.0
ATP2C2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21894,115,112 - 94,215,818 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan116100,032,335 - 100,133,077 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01665,033,470 - 65,127,403 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11684,383,377 - 84,469,126 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1684,375,658 - 84,468,671 (+)Ensemblpanpan1.1panPan2
ATP2C2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1567,986,120 - 68,046,391 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl567,986,355 - 68,046,272 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha568,000,953 - 68,060,899 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0568,219,736 - 68,279,549 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl568,219,971 - 68,279,574 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1568,232,631 - 68,292,428 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0568,068,969 - 68,128,897 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0568,484,329 - 68,544,264 (-)NCBIUU_Cfam_GSD_1.0
ATP2C2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl64,237,440 - 4,313,247 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.164,237,331 - 4,313,273 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.264,664,868 - 4,737,426 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP2C2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1569,771,909 - 69,861,030 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl569,801,818 - 69,860,576 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660475,892,830 - 5,981,240 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp2c2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247461,413,813 - 1,445,646 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247461,399,368 - 1,445,999 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSSTOT00000025502   ⟹   ENSSTOP00000020931
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366413,505,372 - 3,547,968 (-)Ensembl
Ensembl Acc Id: ENSSTOT00000035008   ⟹   ENSSTOP00000025265
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366413,498,693 - 3,547,968 (-)Ensembl
RefSeq Acc Id: XM_040279016   ⟹   XP_040134950
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934927,751,111 - 27,798,901 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040134950 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020931.2
  ENSSTOP00000025265.1
RefSeq Acc Id: XP_040134950   ⟸   XM_040279016
- UniProtKB: I3N985 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSSTOP00000020931   ⟸   ENSSTOT00000025502
Ensembl Acc Id: ENSSTOP00000025265   ⟸   ENSSTOT00000035008
Protein Domains
Cation-transporting P-type ATPase N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019541 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025502.2 UniProtKB/TrEMBL
  ENSSTOT00000035008.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_cation-transptr_C UniProtKB/TrEMBL
  ATPase_P-typ_cation-transptr_N UniProtKB/TrEMBL
  ATPase_P-typ_cyto_dom_N UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom_sf UniProtKB/TrEMBL
  ATPase_P-typ_transduc_dom_A_sf UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  HAD_sf UniProtKB/TrEMBL
  P_typ_ATPase UniProtKB/TrEMBL
NCBI Gene Atp2c2 ENTREZGENE
PANTHER CALCIUM-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PTHR42861:SF23 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  Cation_ATPase_C UniProtKB/TrEMBL
  Cation_ATPase_N UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
PRINTS CATATPASE UniProtKB/TrEMBL
  HATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
SMART Cation_ATPase_N UniProtKB/TrEMBL
Superfamily-SCOP SSF56784 UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81660 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A287CVB9_ICTTR UniProtKB/TrEMBL
  I3N985 ENTREZGENE, UniProtKB/TrEMBL