Aicda (activation induced cytidine deaminase) - Rat Genome Database

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Gene: Aicda (activation induced cytidine deaminase) Ictidomys tridecemlineatus
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Symbol: Aicda
Name: activation induced cytidine deaminase
RGD ID: 12596425
Description: ENCODES a protein that exhibits cytidine deaminase activity (ortholog); identical protein binding (ortholog); ubiquitin protein ligase binding (ortholog); INVOLVED IN cellular response to lipopolysaccharide (ortholog); cytidine deamination (ortholog); defense response to bacterium (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); autoimmune disease (ortholog); B-Cell Chronic Lymphocytic Leukemia (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); protein-containing complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: single-stranded DNA cytosine deaminase
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,736,851 - 98,746,413 (+)NCBI
SpeTri2.0NW_00493687025,039 - 34,601 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Aicda
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494598,736,851 - 98,746,413 (+)NCBI
SpeTri2.0NW_00493687025,039 - 34,601 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AICDA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl128,602,170 - 8,612,867 (-)EnsemblGRCh38hg38GRCh38
GRCh38128,602,170 - 8,612,970 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37128,754,766 - 8,765,455 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36128,646,029 - 8,656,706 (-)NCBINCBI36hg18NCBI36
Build 34128,646,028 - 8,656,706NCBI
Celera1210,292,343 - 10,303,027 (-)NCBI
Cytogenetic Map12p13.31NCBI
HuRef128,537,559 - 8,548,246 (-)NCBIHuRef
CHM1_1128,723,739 - 8,734,421 (-)NCBICHM1_1
Aicda
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,530,768 - 122,541,139 (+)NCBIGRCm39mm39
GRCm39 Ensembl6122,530,760 - 122,541,139 (+)Ensembl
GRCm386122,553,809 - 122,564,180 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,553,801 - 122,564,180 (+)EnsemblGRCm38mm10GRCm38
MGSCv376122,503,827 - 122,514,198 (+)NCBIGRCm37mm9NCBIm37
MGSCv366122,519,428 - 122,529,798 (+)NCBImm8
Celera6124,348,050 - 124,358,431 (+)NCBICelera
Cytogenetic Map6F1NCBI
Aicda
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,774,132 - 155,783,972 (+)NCBI
Rnor_6.0 Ensembl4155,359,921 - 155,369,671 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04155,359,909 - 155,371,104 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04222,384,433 - 222,395,569 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,006,328 - 159,017,501 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14159,257,307 - 159,260,429 (+)NCBI
Celera4144,595,276 - 144,605,030 (+)NCBICelera
Cytogenetic Map4q42NCBI
AICDA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1128,903,288 - 8,913,895 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl128,904,273 - 8,913,917 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0128,688,392 - 8,699,008 (-)NCBIMhudiblu_PPA_v0panPan3
AICDA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,064,107 - 37,073,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,064,080 - 37,073,789 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,542,544 - 9,552,236 (-)NCBI
ROS_Cfam_1.02737,413,568 - 37,423,269 (+)NCBI
UMICH_Zoey_3.12737,294,310 - 37,303,981 (+)NCBI
UNSW_CanFamBas_1.02737,329,570 - 37,339,245 (+)NCBI
UU_Cfam_GSD_1.0279,029,099 - 9,038,784 (-)NCBI
AICDA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl562,777,352 - 62,787,483 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1562,777,236 - 62,787,342 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,607,510 - 65,617,612 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AICDA
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,426,920 - 8,438,331 (-)NCBI
ChlSab1.1 Ensembl118,428,922 - 8,431,641 (-)Ensembl
Aicda
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248604,912,938 - 4,927,846 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013365715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_013365715   ⟹   XP_013221169
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494598,736,851 - 98,746,413 (+)NCBI
SpeTri2.0NW_00493687025,039 - 34,601 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_013221169 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_013221169   ⟸   XM_013365715
- Sequence:
Protein Domains
CMP/dCMP-type deaminase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010972 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000009840 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010968 ENTREZGENE, UniProtKB/TrEMBL
InterPro APOBEC/CMP_deaminase_Zn-bd UniProtKB/TrEMBL
  CMP_dCMP_dom UniProtKB/TrEMBL
  Cytidine_deaminase-like UniProtKB/TrEMBL
NCBI Gene Aicda ENTREZGENE
PROSITE CYT_DCMP_DEAMINASES_1 UniProtKB/TrEMBL
  CYT_DCMP_DEAMINASES_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF53927 UniProtKB/TrEMBL
UniProt I3MGF7_ICTTR UniProtKB/TrEMBL