Acadsb (acyl-CoA dehydrogenase short/branched chain) - Rat Genome Database

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Gene: Acadsb (acyl-CoA dehydrogenase short/branched chain) Ictidomys tridecemlineatus
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Symbol: Acadsb
Name: acyl-CoA dehydrogenase short/branched chain
RGD ID: 12595786
Description: ENCODES a protein that exhibits 2-methylacyl-CoA dehydrogenase activity (ortholog); acyl-CoA dehydrogenase activity (ortholog); electron transfer activity (ortholog); INVOLVED IN fatty acid metabolic process (ortholog); isoleucine catabolic process (ortholog); PARTICIPATES IN 3-hydroxy-3-methylglutaryl-CoA lyase deficiency pathway; 3-hydroxyisobutyric aciduria pathway; 3-methylcrotonyl CoA carboxylase 1 deficiency pathway; ASSOCIATED WITH 2-Methylbutyryl-CoA Dehydrogenase Deficiency (ortholog); autistic disorder (ortholog); epilepsy (ortholog); FOUND IN mitochondrion (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: acyl-CoA dehydrogenase, short/branched chain; short/branched chain specific acyl-CoA dehydrogenase, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721313,851,227 - 13,893,218 (-)NCBI
SpeTri2.0NW_00493648611,668,099 - 11,707,946 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Acadsb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721313,851,227 - 13,893,218 (-)NCBI
SpeTri2.0NW_00493648611,668,099 - 11,707,946 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ACADSB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl10123,008,979 - 123,058,311 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p13 Ensembl10123,008,979 - 123,058,290 (+)EnsemblGRCh38hg38GRCh38
GRCh3810123,009,006 - 123,058,290 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3710124,768,522 - 124,817,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610124,758,419 - 124,807,796 (+)NCBINCBI36hg18NCBI36
Build 3410124,758,523 - 124,807,795NCBI
Celera10118,474,901 - 118,524,347 (+)NCBI
Cytogenetic Map10q26.13NCBI
HuRef10118,386,177 - 118,435,556 (+)NCBIHuRef
CHM1_110125,050,159 - 125,099,529 (+)NCBICHM1_1
Acadsb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397131,012,330 - 131,047,940 (+)NCBIGRCm39mm39
GRCm39 Ensembl7131,012,330 - 131,050,673 (+)Ensembl
GRCm387131,410,601 - 131,446,211 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7131,410,601 - 131,448,944 (+)EnsemblGRCm38mm10GRCm38
MGSCv377138,554,115 - 138,589,725 (+)NCBIGRCm37mm9NCBIm37
MGSCv367131,201,849 - 131,237,354 (+)NCBImm8
Celera7131,221,745 - 131,258,475 (+)NCBICelera
Cytogenetic Map7F3NCBI
Acadsb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21186,188,939 - 186,227,796 (+)NCBI
Rnor_6.0 Ensembl1201,981,357 - 202,021,008 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.01201,981,362 - 202,022,771 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01209,013,684 - 209,048,775 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41190,987,657 - 191,026,275 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11191,165,470 - 191,176,156 (+)NCBI
Celera1183,943,792 - 183,982,502 (+)NCBICelera
Cytogenetic Map1q41NCBI
Acadsb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554771,177,680 - 1,213,347 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554771,177,704 - 1,213,347 (+)NCBIChiLan1.0ChiLan1.0
ACADSB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.110123,839,570 - 123,886,759 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10123,839,570 - 123,886,759 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v010119,565,913 - 119,612,092 (+)NCBIMhudiblu_PPA_v0panPan3
ACADSB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12832,563,697 - 32,604,006 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2832,563,671 - 32,601,063 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2832,629,454 - 32,669,523 (+)NCBI
ROS_Cfam_1.02833,120,444 - 33,160,740 (+)NCBI
UMICH_Zoey_3.12832,677,460 - 32,717,733 (+)NCBI
UNSW_CanFamBas_1.02832,669,875 - 32,710,128 (+)NCBI
UU_Cfam_GSD_1.02832,919,587 - 32,959,883 (+)NCBI
ACADSB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14132,563,309 - 132,626,841 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114132,563,002 - 132,607,574 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214144,149,537 - 144,190,530 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ACADSB
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.19115,684,301 - 115,725,801 (+)NCBI
ChlSab1.1 Ensembl9115,684,279 - 115,724,412 (+)Ensembl
Acadsb
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462473723,949,008 - 23,999,544 (-)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005320745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005320745   ⟹   XP_005320802
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721313,851,227 - 13,893,218 (-)NCBI
SpeTri2.0NW_00493648611,668,099 - 11,707,946 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320802 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005320802   ⟸   XM_005320745
- UniProtKB: A0A287D467 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Acyl-CoA_dh_1   Acyl-CoA_dh_M   Acyl-CoA_dh_N


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006965 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000006226 UniProtKB/TrEMBL
  ENSSTOP00000028348 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000006966 UniProtKB/TrEMBL
  ENSSTOT00000039574 UniProtKB/TrEMBL
Gene3D-CATH 1.10.540.10 UniProtKB/TrEMBL
InterPro Acyl-CoA_DH_CS UniProtKB/TrEMBL
  Acyl-CoA_Oxase/DH_cen-dom UniProtKB/TrEMBL
  AcylCo_DH/oxidase_C UniProtKB/TrEMBL
  AcylCo_DH_C-like UniProtKB/TrEMBL
  AcylCoA_DH/ox_N UniProtKB/TrEMBL
  AcylCoA_DH/ox_N_sf UniProtKB/TrEMBL
  AcylCoA_DH/oxidase_NM_dom UniProtKB/TrEMBL
NCBI Gene Acadsb ENTREZGENE
Pfam Acyl-CoA_dh_1 UniProtKB/TrEMBL
  Acyl-CoA_dh_M UniProtKB/TrEMBL
  Acyl-CoA_dh_N UniProtKB/TrEMBL
PROSITE ACYL_COA_DH_1 UniProtKB/TrEMBL
  ACYL_COA_DH_2 UniProtKB/TrEMBL
Superfamily-SCOP SSF47203 UniProtKB/TrEMBL
  SSF56645 UniProtKB/TrEMBL
UniProt A0A287D467 ENTREZGENE, UniProtKB/TrEMBL
  I3M8V7_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-10-04 Acadsb  acyl-CoA dehydrogenase short/branched chain    acyl-CoA dehydrogenase, short/branched chain  Symbol and/or name change 5135510 APPROVED