Tlr8 (toll like receptor 8) - Rat Genome Database

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Gene: Tlr8 (toll like receptor 8) Ictidomys tridecemlineatus
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Symbol: Tlr8
Name: toll like receptor 8
RGD ID: 12595689
Description: ENCODES a protein that exhibits DNA binding (ortholog); double-stranded RNA binding (ortholog); identical protein binding (ortholog); INVOLVED IN cellular response to mechanical stimulus (ortholog); defense response to virus (ortholog); I-kappaB kinase/NF-kappaB signaling (ortholog); PARTICIPATES IN Toll-like receptor signaling pathway; ASSOCIATED WITH anogenital venereal wart (ortholog); autistic disorder (ortholog); contact dermatitis (ortholog); FOUND IN external side of plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: toll-like receptor 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X2,638,020 - 2,642,609 (+)NCBI
SpeTri2.0NW_0049364702,638,020 - 2,642,201 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Tlr8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X2,638,020 - 2,642,609 (+)NCBI
SpeTri2.0NW_0049364702,638,020 - 2,642,201 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TLR8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 EnsemblX12,906,620 - 12,923,169 (+)EnsemblGRCh38hg38GRCh38
GRCh38X12,906,620 - 12,923,169 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37X12,924,739 - 12,941,288 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X12,834,679 - 12,851,209 (+)NCBINCBI36hg18NCBI36
CeleraX17,038,744 - 17,055,292 (+)NCBI
Cytogenetic MapXp22.2NCBI
HuRefX10,691,356 - 10,708,478 (+)NCBIHuRef
CHM1_1X12,955,183 - 12,971,731 (+)NCBICHM1_1
Tlr8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X166,024,119 - 166,047,325 (-)NCBIGRCm39mm39
GRCm39 EnsemblX166,025,692 - 166,047,325 (-)Ensembl
GRCm38X167,241,123 - 167,264,329 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX167,242,696 - 167,264,329 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X163,680,664 - 163,701,720 (-)NCBIGRCm37mm9NCBIm37
MGSCv36X162,580,693 - 162,607,911 (-)NCBImm8
CeleraX150,416,046 - 150,437,421 (-)NCBICelera
Cytogenetic MapXF5NCBI
Tlr8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2X27,091,780 - 27,116,092 (+)NCBImRatBN7.2
mRatBN7.2 EnsemblX27,091,778 - 27,116,549 (+)Ensembl
Rnor_6.0X28,539,158 - 28,562,803 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX28,539,158 - 28,562,803 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X28,932,434 - 28,956,373 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
CeleraX27,503,122 - 27,525,908 (+)NCBICelera
Cytogenetic MapXq13NCBI
Tlr8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955544303,319 - 306,426 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955544302,027 - 317,110 (-)NCBIChiLan1.0ChiLan1.0
TLR8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1X12,808,144 - 12,824,720 (+)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v0X5,518,742 - 5,535,304 (+)NCBIMhudiblu_PPA_v0panPan3
TLR8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X9,381,159 - 9,399,938 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX9,337,717 - 9,356,229 (+)NCBI
ROS_Cfam_1.0X9,333,237 - 9,351,758 (+)NCBI
UMICH_Zoey_3.1X9,317,807 - 9,336,322 (+)NCBI
UNSW_CanFamBas_1.0X9,357,237 - 9,375,770 (+)NCBI
UU_Cfam_GSD_1.0X9,349,380 - 9,367,898 (+)NCBI
TLR8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX9,549,552 - 9,616,759 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X9,551,284 - 9,616,762 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X10,451,110 - 10,512,940 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TLR8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X11,387,933 - 11,405,056 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 EnsemblX11,400,907 - 11,404,029 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605613,179,722 - 13,196,707 (+)NCBIVero_WHO_p1.0
Tlr8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248821,240,519 - 1,247,311 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005315969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005315969   ⟹   XP_005316026
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X2,638,020 - 2,642,609 (+)NCBI
SpeTri2.0NW_0049364702,638,020 - 2,642,201 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005316026 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3271695 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005316026   ⟸   XM_005315969
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000006087 ENTREZGENE
Ensembl Protein ENSSTOP00000005436 ENTREZGENE
NCBI Gene Tlr8 ENTREZGENE