Insyn2b (inhibitory synaptic factor family member 2B) - Rat Genome Database

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Gene: Insyn2b (inhibitory synaptic factor family member 2B) Ictidomys tridecemlineatus
Analyze
Symbol: Insyn2b
Name: inhibitory synaptic factor family member 2B
RGD ID: 12595542
Description: ASSOCIATED WITH genetic disease (ortholog); immunodeficiency 40 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam196b; family with sequence similarity 196 member B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721396,079,657 - 96,189,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366094,890,470 - 4,911,947 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366094,802,587 - 4,911,945 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Insyn2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721396,079,657 - 96,189,263 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366094,890,470 - 4,911,947 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366094,802,587 - 4,911,945 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INSYN2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385169,861,303 - 169,980,495 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5169,861,303 - 169,980,495 (-)EnsemblGRCh38hg38GRCh38
GRCh375169,288,307 - 169,407,499 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365169,223,297 - 169,340,322 (-)NCBINCBI36Build 36hg18NCBI36
Celera5165,322,310 - 165,439,373 (-)NCBICelera
Cytogenetic Map5q35.1NCBI
HuRef5164,388,897 - 164,505,800 (-)NCBIHuRef
CHM1_15168,723,110 - 168,840,179 (-)NCBICHM1_1
T2T-CHM13v2.05170,396,711 - 170,518,930 (-)NCBIT2T-CHM13v2.0
Insyn2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391134,264,822 - 34,372,642 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1134,264,758 - 34,372,640 (+)EnsemblGRCm39 Ensembl
GRCm381134,314,822 - 34,422,642 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1134,314,758 - 34,422,640 (+)EnsemblGRCm38mm10GRCm38
MGSCv371134,214,822 - 34,322,640 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361134,214,822 - 34,322,640 (+)NCBIMGSCv36mm8
Celera1136,726,207 - 36,834,375 (+)NCBICelera
Cytogenetic Map11A4NCBI
cM Map1119.72NCBI
Insyn2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81019,420,561 - 19,528,006 (+)NCBIGRCr8
mRatBN7.21018,916,721 - 19,023,859 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1019,003,131 - 19,022,139 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01019,270,956 - 19,392,214 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1019,366,793 - 19,368,532 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01019,149,321 - 19,265,167 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41019,383,104 - 19,401,226 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1018,549,000 - 18,660,453 (+)NCBICelera
Cytogenetic Map10q12NCBI
Insyn2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540822,841,584 - 22,863,256 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540822,842,645 - 22,864,156 (-)NCBIChiLan1.0ChiLan1.0
INSYN2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24165,024,830 - 165,143,499 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15163,164,374 - 163,283,055 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05165,227,463 - 165,346,288 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15171,987,796 - 172,105,936 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5171,988,980 - 172,009,754 (-)Ensemblpanpan1.1panPan2
INSYN2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1441,871,751 - 41,987,310 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl441,964,892 - 42,024,748 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha441,824,091 - 41,939,533 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0442,248,028 - 42,399,305 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl442,248,073 - 42,442,172 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1442,065,489 - 42,180,888 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0442,251,962 - 42,367,449 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0442,762,931 - 42,878,508 (+)NCBIUU_Cfam_GSD_1.0
INSYN2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1653,941,568 - 54,057,671 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11653,939,487 - 54,057,671 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21658,457,046 - 58,507,714 (+)NCBISscrofa10.2Sscrofa10.2susScr3
INSYN2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12372,078,442 - 72,197,715 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2372,080,294 - 72,100,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660346,464,019 - 6,584,554 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Insyn2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473320,076,826 - 20,100,153 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473319,982,815 - 20,099,782 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000016524   ⟹   ENSSTOP00000014788
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366094,890,470 - 4,911,947 (+)Ensembl
RefSeq Acc Id: XM_005334134   ⟹   XP_005334191
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721396,079,668 - 96,189,263 (+)NCBI
SpeTri2.0NW_0049366094,802,587 - 4,911,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271732   ⟹   XP_040127666
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440721396,079,657 - 96,189,263 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005334191 (Get FASTA)   NCBI Sequence Viewer  
  XP_040127666 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000014788.2
GenBank Protein KAG3265298 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005334191   ⟸   XM_005334134
- Peptide Label: isoform X2
- UniProtKB: I3MRQ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040127666   ⟸   XM_040271732
- Peptide Label: isoform X1
RefSeq Acc Id: ENSSTOP00000014788   ⟸   ENSSTOT00000016524


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000016521 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000016524.3 UniProtKB/TrEMBL
InterPro INSYN2 UniProtKB/TrEMBL
NCBI Gene Fam196b ENTREZGENE
PANTHER PROTEIN INSYN2B UniProtKB/TrEMBL
  PTHR28682 UniProtKB/TrEMBL
Pfam FAM196 UniProtKB/TrEMBL
UniProt I3MRQ3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Insyn2b  inhibitory synaptic factor family member 2B  Fam196b  family with sequence similarity 196 member B  Symbol and/or name change 5135510 APPROVED