Psme3ip1 (proteasome activator subunit 3 interacting protein 1) - Rat Genome Database

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Gene: Psme3ip1 (proteasome activator subunit 3 interacting protein 1) Ictidomys tridecemlineatus
Analyze
Symbol: Psme3ip1
Name: proteasome activator subunit 3 interacting protein 1
RGD ID: 12594851
Description: INVOLVED IN negative regulation of proteasomal protein catabolic process (inferred); ASSOCIATED WITH Bardet-Biedl syndrome (ortholog); developmental and epileptic encephalopathy (ortholog); early infantile epileptic encephalopathy (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fam192a; family with sequence similarity 192 member A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,294,806 - 50,322,297 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,268,337 - 9,294,163 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,266,778 - 9,294,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Psme3ip1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934950,294,806 - 50,322,297 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364759,268,337 - 9,294,163 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364759,266,778 - 9,294,173 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSME3IP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381657,152,466 - 57,186,116 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1657,152,466 - 57,186,116 (-)EnsemblGRCh38hg38GRCh38
GRCh371657,186,378 - 57,220,028 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,743,879 - 55,777,477 (-)NCBINCBI36Build 36hg18NCBI36
Celera1641,686,193 - 41,719,798 (-)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1643,056,249 - 43,089,550 (-)NCBIHuRef
CHM1_11658,593,865 - 58,627,473 (-)NCBICHM1_1
T2T-CHM13v2.01662,948,740 - 62,982,387 (-)NCBIT2T-CHM13v2.0
Psme3ip1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39895,301,568 - 95,328,483 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl895,300,766 - 95,328,625 (-)EnsemblGRCm39 Ensembl
GRCm38894,574,940 - 94,601,962 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl894,574,138 - 94,601,997 (-)EnsemblGRCm38mm10GRCm38
MGSCv37897,098,840 - 97,125,626 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36897,463,267 - 97,490,808 (-)NCBIMGSCv36mm8
Celera898,908,605 - 98,935,408 (-)NCBICelera
Cytogenetic Map8C5NCBI
cM Map846.58NCBI
Psme3ip1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81910,407,382 - 10,436,029 (+)NCBIGRCr8
mRatBN7.21910,401,400 - 10,430,059 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1910,401,532 - 10,429,987 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1910,364,669 - 10,393,278 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01911,131,526 - 11,160,133 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01910,418,477 - 10,447,085 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01910,827,057 - 10,856,747 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1910,827,371 - 10,856,745 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01910,821,258 - 10,850,609 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41910,843,499 - 10,873,030 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11910,848,324 - 10,877,854 (+)NCBI
Celera1910,290,964 - 10,319,104 (+)NCBICelera
Cytogenetic Map19p13NCBI
Psme3ip1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543314,813,688 - 14,843,223 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543314,813,688 - 14,843,446 (-)NCBIChiLan1.0ChiLan1.0
PSME3IP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21866,624,899 - 66,658,296 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11672,546,752 - 72,579,085 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01637,430,698 - 37,464,089 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11656,563,353 - 56,596,683 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1656,563,353 - 56,596,619 (-)Ensemblpanpan1.1panPan2
PSME3IP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1259,185,238 - 59,220,515 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl259,186,349 - 59,220,515 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha255,813,453 - 55,848,672 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0259,723,550 - 59,758,813 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl259,724,813 - 59,758,831 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1256,554,866 - 56,590,086 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0257,562,233 - 57,597,437 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0258,456,317 - 58,491,545 (+)NCBIUU_Cfam_GSD_1.0
PSME3IP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl619,102,013 - 19,154,177 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1619,098,097 - 19,154,288 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PSME3IP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1543,104,475 - 43,137,745 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604733,181,928 - 33,215,600 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Psme3ip1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474628,862,420 - 28,900,668 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474628,862,204 - 28,900,758 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000010229   ⟹   ENSSTOP00000009177
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364759,268,337 - 9,294,163 (-)Ensembl
RefSeq Acc Id: XM_005318218   ⟹   XP_005318275
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,294,932 - 50,322,297 (+)NCBI
SpeTri2.0NW_0049364759,266,778 - 9,294,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013366424   ⟹   XP_013221878
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,294,932 - 50,322,297 (+)NCBI
SpeTri2.0NW_0049364759,266,778 - 9,294,173 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013366435   ⟹   XP_013221889
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,294,924 - 50,322,297 (+)NCBI
SpeTri2.0NW_0049364759,266,778 - 9,294,172 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013366438   ⟹   XP_013221892
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,294,806 - 50,322,297 (+)NCBI
SpeTri2.0NW_0049364759,266,778 - 9,294,171 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040279539   ⟹   XP_040135473
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440934950,298,225 - 50,322,297 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_013221889   ⟸   XM_013366435
- Peptide Label: isoform X2
- UniProtKB: I3MF30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013221892   ⟸   XM_013366438
- Peptide Label: isoform X2
- UniProtKB: I3MF30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005318275   ⟸   XM_005318218
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013221878   ⟸   XM_013366424
- Peptide Label: isoform X2
- UniProtKB: I3MF30 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040135473   ⟸   XM_040279539
- Peptide Label: isoform X2
- UniProtKB: I3MF30 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000009177   ⟸   ENSSTOT00000010229
Protein Domains
FAM192A/Fyv6 N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010232 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010229.3 UniProtKB/TrEMBL
InterPro FAM192A UniProtKB/TrEMBL
  FAM192A/Fyv6_N UniProtKB/TrEMBL
NCBI Gene Fam192a ENTREZGENE
PANTHER PSME3-INTERACTING PROTEIN UniProtKB/TrEMBL
  PTHR13495 UniProtKB/TrEMBL
Pfam FAM192A_Fyv6_N UniProtKB/TrEMBL
UniProt I3MF30 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-09-10 Psme3ip1  proteasome activator subunit 3 interacting protein 1  Fam192a  family with sequence similarity 192 member A  Symbol and/or name change 5135510 APPROVED