Zbtb10 (zinc finger and BTB domain containing 10) - Rat Genome Database

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Gene: Zbtb10 (zinc finger and BTB domain containing 10) Ictidomys tridecemlineatus
Analyze
Symbol: Zbtb10
Name: zinc finger and BTB domain containing 10
RGD ID: 12592698
Description: ENCODES a protein that exhibits DNA binding (ortholog); DNA-binding transcription repressor activity, RNA polymerase II-specific (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH astigmatism (ortholog); genetic disease (ortholog); FOUND IN chromosome, telomeric region (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger and BTB domain containing 10, transcript variant X1; zinc finger and BTB domain containing 10, transcript variant X2; zinc finger and BTB domain-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530351,323,733 - 51,361,838 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366563,519,033 - 3,550,862 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366563,516,756 - 3,552,278 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Zbtb10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530351,323,733 - 51,361,838 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366563,519,033 - 3,550,862 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366563,516,756 - 3,552,278 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZBTB10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38880,485,593 - 80,526,265 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl880,485,619 - 80,526,265 (+)EnsemblGRCh38hg38GRCh38
GRCh37881,397,828 - 81,438,500 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36881,561,003 - 81,597,165 (+)NCBINCBI36Build 36hg18NCBI36
Build 34881,561,002 - 81,595,322NCBI
Celera877,403,411 - 77,439,573 (+)NCBICelera
Cytogenetic Map8q21.13NCBI
HuRef876,887,755 - 76,928,401 (+)NCBIHuRef
CHM1_1881,449,813 - 81,490,426 (+)NCBICHM1_1
T2T-CHM13v2.0880,917,153 - 80,957,852 (+)NCBIT2T-CHM13v2.0
Zbtb10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3939,315,627 - 9,350,393 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl39,315,662 - 9,350,393 (+)EnsemblGRCm39 Ensembl
GRCm3839,250,567 - 9,285,333 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl39,250,602 - 9,285,333 (+)EnsemblGRCm38mm10GRCm38
MGSCv3739,250,567 - 9,285,333 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3639,120,847 - 9,268,406 (+)NCBIMGSCv36mm8
Celera39,264,557 - 9,301,335 (+)NCBICelera
Cytogenetic Map3A1NCBI
cM Map32.25NCBI
Zbtb10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8294,382,670 - 94,417,308 (-)NCBIGRCr8
mRatBN7.2292,475,254 - 92,509,892 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl292,479,014 - 92,512,515 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx298,984,227 - 99,015,192 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0297,105,240 - 97,136,209 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0292,162,106 - 92,193,075 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0294,692,939 - 94,730,976 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl294,692,939 - 94,730,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02114,442,396 - 114,479,721 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02113,381,190 - 113,381,601 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4294,538,617 - 94,569,036 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1294,483,578 - 94,513,998 (-)NCBI
Celera288,065,419 - 88,095,620 (-)NCBICelera
Cytogenetic Map2q23NCBI
Zbtb10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955444983,418 - 1,006,009 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955444983,308 - 1,006,439 (-)NCBIChiLan1.0ChiLan1.0
ZBTB10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2796,226,434 - 96,284,808 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1871,852,783 - 71,912,643 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0877,011,325 - 77,051,778 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1878,635,797 - 78,676,593 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl878,636,444 - 78,669,851 (+)Ensemblpanpan1.1panPan2
ZBTB10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12927,750,151 - 27,781,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2927,750,146 - 27,777,650 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2928,023,919 - 28,056,757 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02927,874,508 - 27,907,339 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2927,873,837 - 28,056,534 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12927,928,249 - 27,961,065 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02927,958,623 - 27,991,433 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02928,315,753 - 28,348,605 (+)NCBIUU_Cfam_GSD_1.0
ZBTB10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl456,136,033 - 56,175,296 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1456,138,082 - 56,174,337 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2461,268,500 - 61,304,770 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZBTB10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1875,918,402 - 75,959,221 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl875,919,657 - 75,952,485 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603965,234,924 - 65,276,024 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zbtb10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474410,878,616 - 10,916,852 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474410,874,076 - 10,917,976 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000013962   ⟹   ENSSTOP00000012512
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366563,519,033 - 3,550,862 (-)Ensembl
RefSeq Acc Id: XM_005336011   ⟹   XP_005336068
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530351,323,733 - 51,360,349 (-)NCBI
SpeTri2.0NW_0049366563,516,756 - 3,550,858 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005336013   ⟹   XP_005336070
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530351,323,733 - 51,361,838 (-)NCBI
SpeTri2.0NW_0049366563,516,756 - 3,552,278 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005336068 (Get FASTA)   NCBI Sequence Viewer  
  XP_005336070 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000012512.3
GenBank Protein KAG3273972 (Get FASTA)   NCBI Sequence Viewer  
  KAG3273973 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005336070   ⟸   XM_005336013
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_005336068   ⟸   XM_005336011
- Peptide Label: isoform X1
- UniProtKB: I3MM10 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000012512   ⟸   ENSSTOT00000013962
Protein Domains
BTB   C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000013962 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000013962.3 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro BTB/POZ_dom UniProtKB/TrEMBL
  SKP1/BTB/POZ_sf UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene Zbtb10 ENTREZGENE
PANTHER AGAP004733-PA UniProtKB/TrEMBL
  ZINC FINGER AND BTB DOMAIN CONTAINING 10 UniProtKB/TrEMBL
Pfam BTB UniProtKB/TrEMBL
PROSITE BTB UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART BTB UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF54695 UniProtKB/TrEMBL
  SSF57667 UniProtKB/TrEMBL
UniProt I3MM10 ENTREZGENE, UniProtKB/TrEMBL