CUNH1orf174 (chromosome unknown C1orf174 homolog) - Rat Genome Database

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Gene: CUNH1orf174 (chromosome unknown C1orf174 homolog) Ictidomys tridecemlineatus
Analyze
Symbol: CUNH1orf174
Name: chromosome unknown C1orf174 homolog
RGD ID: 12592348
Description: ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); genetic disease (ortholog); megacolon (ortholog); FOUND IN nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC110599544; uncharacterized LOC110599544; UPF0688 protein C1orf174 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,372,566 - 29,393,056 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493673772,930 - 78,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleoplasm  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
CUNH1orf174
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505829,372,566 - 29,393,056 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493673772,930 - 78,824 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C1orf174
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3813,889,133 - 3,900,272 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl13,889,125 - 3,900,293 (-)EnsemblGRCh38hg38GRCh38
GRCh3713,805,697 - 3,816,836 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3613,795,557 - 3,806,709 (-)NCBINCBI36Build 36hg18NCBI36
Celera13,059,840 - 3,070,495 (-)NCBICelera
Cytogenetic Map1p36.32NCBI
HuRef13,101,393 - 3,112,467 (-)NCBIHuRef
CHM1_113,792,710 - 3,803,318 (-)NCBICHM1_1
T2T-CHM13v2.013,401,037 - 3,412,176 (-)NCBIT2T-CHM13v2.0
A430005L14Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394154,041,694 - 154,046,382 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4154,041,694 - 154,046,382 (+)EnsemblGRCm39 Ensembl
GRCm384153,957,237 - 153,961,925 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4153,957,237 - 153,961,925 (+)EnsemblGRCm38mm10GRCm38
MGSCv374153,331,346 - 153,336,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364152,801,037 - 152,805,714 (+)NCBIMGSCv36mm8
Celera4156,245,393 - 156,250,081 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map483.78NCBI
C5h1orf174
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85169,798,004 - 169,802,449 (+)NCBIGRCr8
mRatBN7.25164,515,578 - 164,520,022 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5164,515,559 - 164,520,021 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5167,219,688 - 167,224,133 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05169,041,096 - 169,045,541 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05169,003,545 - 169,007,990 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05171,242,899 - 171,247,344 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5171,242,897 - 171,247,346 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05174,734,521 - 174,738,966 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45170,743,188 - 170,747,633 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15170,753,682 - 170,758,126 (+)NCBI
Celera5162,727,542 - 162,731,987 (+)NCBICelera
Cytogenetic Map5q36NCBI
CUNH1orf174
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554867,831,913 - 7,833,898 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554867,821,396 - 7,834,357 (+)NCBIChiLan1.0ChiLan1.0
C1H1orf174
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21224,399,853 - 224,417,162 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11223,041,337 - 223,060,587 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012,563,184 - 2,574,235 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.113,682,175 - 3,692,621 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl13,682,181 - 3,692,637 (-)Ensemblpanpan1.1panPan2
C5H1orf174
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1558,358,540 - 58,366,356 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl558,359,025 - 58,366,243 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha558,368,835 - 58,376,726 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0558,566,043 - 58,573,933 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl558,566,043 - 58,573,907 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1558,573,741 - 58,581,631 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0558,442,648 - 58,450,536 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0558,832,916 - 58,840,806 (-)NCBIUU_Cfam_GSD_1.0
C6H1orf174
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl665,323,756 - 65,333,886 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1665,326,980 - 65,333,891 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2660,030,404 - 60,037,317 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH1orf174
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120127,780,801 - 127,792,440 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20127,780,903 - 127,791,615 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605431,977,059 - 31,988,521 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf174
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248186,691,432 - 6,698,596 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248186,691,416 - 6,698,288 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_040287811   ⟹   XP_040143745
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505829,372,566 - 29,392,994 (-)NCBI
RefSeq Acc Id: XM_040287812   ⟹   XP_040143746
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505829,372,566 - 29,393,056 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040143745 (Get FASTA)   NCBI Sequence Viewer  
  XP_040143746 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3281993 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040143746   ⟸   XM_040287812
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040143745   ⟸   XM_040287811
- Peptide Label: isoform X1


Additional Information

Database Acc Id Source(s)
NCBI Gene CUNH1orf174 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 CUNH1orf174  chromosome unknown C1orf174 homolog  LOC110599544  uncharacterized LOC110599544  Data merged from RGD:13087540 737654 PROVISIONAL