Stx18 (syntaxin 18) - Rat Genome Database

Name: Stx18
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Stx18 (syntaxin 18) Ictidomys tridecemlineatus

Analyze

Symbol:

Stx18

Name:

syntaxin 18

RGD ID:

12592289

Description:

ENCODES a protein that exhibits protein domain specific binding (inferred); SNAP receptor activity (inferred); INVOLVED IN endoplasmic reticulum membrane organization (inferred); intracellular protein transport (inferred); membrane fusion (inferred); ASSOCIATED WITH Ellis-Van Creveld syndrome (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (inferred); endoplasmic reticulum membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

syntaxin 18, transcript variant X1; syntaxin 18, transcript variant X2; syntaxin 18, transcript variant X3; syntaxin 18, transcript variant X4; syntaxin-18

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	STX18 (syntaxin 18)	NCBI	Ortholog
Mus musculus (house mouse):	Stx18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Stx18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Stx18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	STX18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	STX18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	STX18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	STX18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Stx18 (syntaxin 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	63,345,017 - 63,391,338 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	17,047,745 - 17,161,655 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	17,046,508 - 17,093,032 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ellis-Van Creveld syndrome (ISO)

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

endoplasmic reticulum membrane organization (IEA)

intracellular protein transport (IEA)

membrane fusion (IEA)

positive regulation of ER to Golgi vesicle-mediated transport (IEA)

positive regulation of organelle assembly (IEA)

protein transport (IEA)

regulation of Golgi organization (IEA)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (IEA)

vesicle-mediated transport (IEA)

Cellular Component

endoplasmic reticulum (IEA)

endoplasmic reticulum membrane (IEA)

membrane (IEA)

SNARE complex (IEA)

Molecular Function

protein binding (ISO)

protein domain specific binding (IEA)

SNAP receptor activity (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Stx18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	63,345,017 - 63,391,338 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936477	17,047,745 - 17,161,655 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936477	17,046,508 - 17,093,032 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

STX18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	4,418,968 - 4,542,343 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	4,415,742 - 4,542,346 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	4,420,695 - 4,544,070 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	4,471,596 - 4,594,676 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	4,538,769 - 4,661,847	NCBI
Celera	4	4,318,693 - 4,440,967 (-)	NCBI		Celera
Cytogenetic Map	4	p16.3-p16.2	NCBI
HuRef	4	4,356,318 - 4,479,193 (-)	NCBI		HuRef
CHM1_1	4	4,418,651 - 4,541,705 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	4,388,433 - 4,511,917 (-)	NCBI		T2T-CHM13v2.0

Stx18
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	38,194,073 - 38,295,114 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	38,196,086 - 38,295,109 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	38,036,729 - 38,137,770 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	38,038,742 - 38,137,765 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	38,430,474 - 38,528,057 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	38,327,484 - 38,425,067 (+)	NCBI		MGSCv36	mm8
Celera	5	35,494,103 - 35,586,722 (+)	NCBI		Celera
Cytogenetic Map	5	B3	NCBI
cM Map	5	20.21	NCBI

Stx18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	76,883,767 - 76,976,442 (-)	NCBI		GRCr8
mRatBN7.2	14	72,670,683 - 72,761,423 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	72,670,411 - 72,761,464 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	77,113,168 - 77,203,111 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	78,354,036 - 78,443,988 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	74,794,104 - 74,884,055 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	77,402,952 - 77,492,910 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	77,402,953 - 77,492,910 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	77,384,814 - 77,475,005 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	77,954,635 - 78,045,042 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	77,957,026 - 78,047,433 (-)	NCBI
Celera	14	71,621,656 - 71,711,666 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

Stx18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955514	5,168,143 - 5,272,649 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955514	5,168,143 - 5,272,655 (+)	NCBI	ChiLan1.0	ChiLan1.0

STX18
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	4,683,721 - 4,806,026 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	4,616,465 - 4,739,033 (-)	NCBI		NHGRI_mPanPan1
PanPan1.1	4	4,496,364 - 4,619,062 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	4,493,543 - 4,619,062 (-)	Ensembl	panpan1.1		panPan2

STX18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	69,831,401 - 69,951,522 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	69,831,793 - 69,951,498 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	72,383,138 - 72,503,231 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	70,587,932 - 70,708,196 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	70,587,934 - 70,708,169 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	69,861,870 - 69,983,942 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	70,027,077 - 70,147,284 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	70,408,509 - 70,528,727 (-)	NCBI		UU_Cfam_GSD_1.0

STX18
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	5,890,765 - 6,004,399 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	5,883,653 - 6,000,944 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	5,535,778 - 5,618,100 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

STX18
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	40,576,887 - 40,701,769 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	40,577,453 - 40,700,827 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	87,377,999 - 87,502,490 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Stx18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624755	21,528,004 - 21,634,727 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624755	21,528,986 - 21,634,749 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005318973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722111	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000014990 ⟹ ENSSTOP00000013432

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936477	17,047,745 - 17,161,655 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000033829 ⟹ ENSSTOP00000028591

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936477	17,047,745 - 17,161,655 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000040672 ⟹ ENSSTOP00000029654

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936477	17,048,377 - 17,161,655 (-)	Ensembl

RefSeq Acc Id:

XM_005318973 ⟹ XP_005319030

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	63,345,017 - 63,391,338 (-)	NCBI
SpeTri2.0	NW_004936477	17,046,508 - 17,093,032 (-)	NCBI

Sequence:

show sequence

AGATTTCTCATATTGGCAAACTGAGAGATTTTCTTCTGGAACACAGGAAAGATTACATTAATGC
TTATAGCCATATCATGTCTGAATATGGGAGGATGACAGATGCAGAACGTGACCAGATAGACCAG
GATGCTCAGATATTCATGCGGACCTGTTCAGAAGCAATCCAGCAACTCAGAACAGAAGCCCACA
AGGAGATACATTCCCAGCAAGTGAAGGAGCACAGGACTGCTGTTCTGGATTTCATTCAAGATTA
CTTAAAAAGAGTGTGTAAACTTTACTCAGAACAGAGAGCCATTCGAGTTAAACGAGTGGTGGAT
AAGAAGAGATTATCTAAGCTGGAACCTGAGCCAAGTACAAAGACAAGAGAATCCACATTCTCTG
AGAAAGTTTCACAGAATCCTTCAAAAGACTCTGAAGAAACACTTGCCACTGAAGAGCATCCAGA
AAAGATTTTGACCGAAGCACAACCTGAATTAGGAACGTGGGGAGATGGCAAAGGTGAAGATGAA
TTATCCCCAGAAGAAATACAAATGTTTGAACAAGAAAATCAGCGGTTAATTGGGGAAATGAACA
ACTTATTTGATGAAGTAAGGCAAATCGAAGGGAGAGTGGTTGAAATCTCCAGACTCCAAGAGAT
ATTCACGGAAAAGGTTTTGCAACAGGAAGCCGAGATTGATAGCATTCACCAGTTAGTGGTAGGA
GCAACTGAAAACATCAAGGAGGGCAATGAGGACATACGAGAGGCCATTAAAAACAACGCTGGTT
TCCGTGTGTGGATCCTCTTCTTCCTGGTGATGTGTTCCTTCTCCCTTCTCTTCCTGGACTGGTA
CGACAGCTAGCTGCCACAGGGTCTGCGGCCTTGGCCAAGGAAGAAGTGGGCCACAGAAGAGCAG
GGCCTGATACCCCATGCCTGCACACCTGCCTGCAGGAAGAGTCTCCAGGATCACCTGTTTGTAA
CTGAAAGCCTGCTCCATGTGGACCATGTCTGCATACAGCGTCCAGTATCCTGGCATCCTGTGGG
GATGAGCCAGTTCACACCACTCCTCCTTACAAAACACGTGCATGGACAGTCGTTGGGTGGCACA
GGTACCCTTGAGTTCTTTATTTGCACCAAGTGAAATGTAGGAAATTATTGTAGTCAATTTACAG
TCAATAAAGTACATGTCTACTAGAATACCTGGGGGTGCGCCTGTGTGCTTTGCTTACGTGGGCA
CTTTGCAGGGGTGGGGGGAGGTTTCGCAGGACAAGTTTGGCACGCGTTTAGTGCTTGCATGTAT
TGCTCGCAGCTTGGGCCACTGTGCTGCATTCTGTCCACACCTAGGTCAGGATCTTTGTTTCGAA
ACACCCTTGATAATAAAACACGCATTTGTCTTGGAA

hide sequence

RefSeq Acc Id:

XM_021722109 ⟹ XP_021577784

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	63,345,017 - 63,391,338 (-)	NCBI
SpeTri2.0	NW_004936477	17,046,508 - 17,093,032 (-)	NCBI

Sequence:

show sequence

AGATTTCTCATATTGGCAAACTGAGAGATTTTCTTCTGGAACACAGGAAAGATTACATTAATGC
TTATAGCCATATCATGTCTGAATATGGGAGGATGACAGATGCAGAACGTGACCAGATAGACCAG
GATGCTCAGATATTCATGCGGACCTGTTCAGAAGCAATCCAGCAACTCAGAACAGAAGCCCACA
AGGAGATACATTCCCAGCAAGTGAAGGAGCACAGGACTGCTGTTCTGGATTTCATTCAAGATTA
CTTAAAAAGAGTGTGTAAACTTTACTCAGAACAGAGAGCCATTCGAGTTAAACGAGTGGTGGAT
AAGAAGAGATTATCTAAGCTGGAACCTGAGCCAAGTACAAAGACAAGAGAATCCACATTCTCTG
AGAAAGTTTCACAGAATCCTTCAAAAGACTCTGAAGAAACACTTGCCACTGAAGAGCATCCAGA
AAAGATTTTGACCGAAGCACAACCTGAATTAGGAACGTGGGGAGATGGCAAAGGTGAAGATGAA
TTATCCCCAGAAGAAATACAAATGTTTGAACAAGAAAATCAGCGGTTAATTGGGGAAATGAACA
ACTTATTTGATGAAGTAAGGCAAATCGAAGGGAGAGTGGTTGAAATCTCCAGACTCCAAGAGAT
ATTCACGGAAAAGGTTTTGCAACAGGAAGCCGAGATTGATAGCATTCACCAGTTAGTGGTAGGA
GCAACTGAAAACATCAAGGAGGGCAATGAGGACATACGAGAGGCCATTAAAAACAACGCTGGTT
TCCGTGTGTGGATCCTCTTCTTCCTGGTGATGTGTTCCTTCTCCCTTCTCTTCCTGGACTGGTA
CGACAGCTAGCTGCCACAGGGTCTGCGGCCTTGGCCAAGGTATGCAGGACGAGCATCTGGAGGG
GCACCTCTGACATACCAAGCGTGTACTCAGGTGTCTGGCATCGGAGGAGCTTTGATTAGGTTTT
ATCACAAAGTCATTTGAGGGACCAGGGGGTTGAGACAGACATGTACATCACAAAAGGGGTACCC
AGGCCAGTGGGCCTGTGCCTGTTCAGCAGCTGAAGAGCAGTGCACAACTTGGGAGTGGTATGCC
TACAGCCCTAAGGCACAAGTCAGCATGAGCGAGAGGTCGTGGACTGCACCTCCGCTTGTGCTGC
CCTGGCAGGGACAGCTCCCCCATGAACTGCAGGCCACACTCCCCGTGTTGTCTCAGGGCTCATC
CCAGCAGCTGCAGGACAGAACTTGGCTAAGGATGACTTTACAAAGGATTGGTGCCTCAGTTCCT
TGTAGCTTCTGGTTGCCCGAGTCAGCTGAGAGTCACAGTGTTGCAGAAGAGTTTCATTTGCCTC
ATAAACCTATTAAATACAGTTGTGGCCCTCGCTGCGTTGCCTCGCTGCAGTAGGAACACTGCAG
TCCAGTGGTTGCCCACCTGCCTGGATGGGCAAGCTCCGAGGTGCTCCAGGGCTGCCTGCCTGGC
TCCAGCTGCCGCCCCCAACACTCTTAATGGCAGGGCAGGAACTGGGGCCCCTAAGTCCTGGCTT
CCTGCTTCAGGGTTCAAGTATTATGTGTTTAAAGGAAGAAGTGGGCCACAGAAGAGCAGGGCCT
GATACCCCATGCCTGCACACCTGCCTGCAGGAAGAGTCTCCAGGATCACCTGTTTGTAACTGAA
AGCCTGCTCCATGTGGACCATGTCTGCATACAGCGTCCAGTATCCTGGCATCCTGTGGGGATGA
GCCAGTTCACACCACTCCTCCTTACAAAACACGTGCATGGACAGTCGTTGGGTGGCACAGGTAC
CCTTGAGTTCTTTATTTGCACCAAGTGAAATGTAGGAAATTATTGTAGTCAATTTACAGTCAAT
AAAGTACATGTCTACTAGAATACCTGGGGGTGCGCCTGTGTGCTTTGCTTACGTGGGCACTTTG
CAGGGGTGGGGGGAGGTTTCGCAGGACAAGTTTGGCACGCGTTTAGTGCTTGCATGTATTGCTC
GCAGCTTGGGCCACTGTGCTGCATTCTGTCCACACCTAGGTCAGGATCTTTGTTTCGAAACACC
CTTGATAATAAAACACGCATTTGTCTTGGAA

hide sequence

RefSeq Acc Id:

XM_021722110 ⟹ XP_021577785

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	63,345,017 - 63,390,285 (-)	NCBI
SpeTri2.0	NW_004936477	17,046,508 - 17,091,940 (-)	NCBI

Sequence:

show sequence

AATTTTAGATTTCTCATATTGGCAAACTGAGAGATTTTCTTCTGGAACACAGGAAAGATTATAT
TAATGCTTACAGCCATATCATGTCTGAATATGGGAGGATGACAGATGCAGAACGTGACCAGATA
GACCAGGATGCTCAGATATTCATGCGGACCTGTTCAGAAGCAATCCAGCAACTCAGAACAGAAG
CCCACAAGGAGATACATTCCCAGCAAGTGAAGGAGCACAGGACTGCTGTTCTGGATTTCATTCA
AGATTACTTAAAAAGAGTGTGTAAACTTTACTCAGAACAGAGAGCCATTCGAGTTAAACGAGTG
GTGGATAAGAAGAGATTATCTAAGCTGGAACCTGAGCCAAGTACAAAGACAAGAGAATCCACAT
TCTCTGAGAAAGTTTCACAGAATCCTTCAAAAGACTCTGAAGAAACACTTGCCACTGAAGAGCA
TCCAGAAAAGATTTTGACCGAAGCACAACCTGAATTAGGAACGTGGGGAGATGGCAAAGGTGAA
GATGAATTATCCCCAGAAGAAATACAAATGTTTGAACAAGAAAATCAGCGGTTAATTGGGGAAA
TGAACAACTTATTTGATGAAGTAAGGCAAATCGAAGGGAGAGTGGTTGAAATCTCCAGACTCCA
AGAGATATTCACGGAAAAGGTTTTGCAACAGGAAGCCGAGATTGATAGCATTCACCAGTTAGTG
GTAGGAGCAACTGAAAACATCAAGGAGGGCAATGAGGACATACGAGAGGCCATTAAAAACAACG
CTGGTTTCCGTGTGTGGATCCTCTTCTTCCTGGTGATGTGTTCCTTCTCCCTTCTCTTCCTGGA
CTGGTACGACAGCTAGCTGCCACAGGGTCTGCGGCCTTGGCCAAGGTATGCAGGACGAGCATCT
GGAGGGGCACCTCTGACATACCAAGCGTGTACTCAGGTGTCTGGCATCGGAGGAGCTTTGATTA
GGTTTTATCACAAAGTCATTTGAGGGACCAGGGGGTTGAGACAGACATGTACATCACAAAAGGG
GTACCCAGGCCAGTGGGCCTGTGCCTGTTCAGCAGCTGAAGAGCAGTGCACAACTTGGGAGTGG
TATGCCTACAGCCCTAAGGCACAAGTCAGCATGAGCGAGAGGTCGTGGACTGCACCTCCGCTTG
TGCTGCCCTGGCAGGGACAGCTCCCCCATGAACTGCAGGCCACACTCCCCGTGTTGTCTCAGGG
CTCATCCCAGCAGCTGCAGGACAGAACTTGGCTAAGGATGACTTTACAAAGGATTGGTGCCTCA
GTTCCTTGTAGCTTCTGGTTGCCCGAGTCAGCTGAGAGTCACAGTGTTGCAGAAGAGTTTCATT
TGCCTCATAAACCTATTAAATACAGTTGTGGCCCTCGCTGCGTTGCCTCGCTGCAGTAGGAACA
CTGCAGTCCAGTGGTTGCCCACCTGCCTGGATGGGCAAGCTCCGAGGTGCTCCAGGGCTGCCTG
CCTGGCTCCAGCTGCCGCCCCCAACACTCTTAATGGCAGGGCAGGAACTGGGGCCCCTAAGTCC
TGGCTTCCTGCTTCAGGGTTCAAGTATTATGTGTTTAAAGGAAGAAGTGGGCCACAGAAGAGCA
GGGCCTGATACCCCATGCCTGCACACCTGCCTGCAGGAAGAGTCTCCAGGATCACCTGTTTGTA
ACTGAAAGCCTGCTCCATGTGGACCATGTCTGCATACAGCGTCCAGTATCCTGGCATCCTGTGG
GGATGAGCCAGTTCACACCACTCCTCCTTACAAAACACGTGCATGGACAGTCGTTGGGTGGCAC
AGGTACCCTTGAGTTCTTTATTTGCACCAAGTGAAATGTAGGAAATTATTGTAGTCAATTTACA
GTCAATAAAGTACATGTCTACTAGAATACCTGGGGGTGCGCCTGTGTGCTTTGCTTACGTGGGC
ACTTTGCAGGGGTGGGGGGAGGTTTCGCAGGACAAGTTTGGCACGCGTTTAGTGCTTGCATGTA
TTGCTCGCAGCTTGGGCCACTGTGCTGCATTCTGTCCACACCTAGGTCAGGATCTTTGTTTCGA
AACACCCTTGATAATAAAACACGCATTTGTCTTGGAA

hide sequence

RefSeq Acc Id:

XM_021722111 ⟹ XP_021577786

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	63,345,017 - 63,391,338 (-)	NCBI
SpeTri2.0	NW_004936477	17,046,508 - 17,093,032 (-)	NCBI

Sequence:

show sequence

AGATTTCTCATATTGGCAAACTGAGAGATTTTCTTCTGGAACACAGGAAAGATTACATTAATGC
TTATAGCCATATCATGTCTGAATATGGGAGGATGACAGATGCAGAACGTGACCAGATAGACCAG
GATGCTCAGATATTCATGCGGACCTGTTCAGAAGCAATCCAGCAACTCAGAACAGAAGCCCACA
AGGAGATACATTCCCAGCAAGTGAAGGAGCACAGGACTGCTGTTCTGGATTTCATTCAAGATTA
CTTAAAAAGAGTGTGTAAACTTTACTCAGAACAGAGAGCCATTCGAGTTAAACGAGTGGTGGAT
AAGAAGAGATTATCTAAGCTGGAACCTGAGCCAAGTACAAAGACAAGAGAATCCACATTCTCTG
AGAAAGTTTCACAGAATCCTTCAAAAGACTCTGAAGAAACACTTGCCACTGAAGAGCATCCAGA
AAAGATTTTGACCGAAGCACAACCTGAATTAGGAACGTGGGGAGATGGCAAAGGTGAAGATGAA
TTATCCCCAGAAGAAATACAAATGTTTGAACAAGAAAATCAGCGGTTAATTGGGGAAATGAACA
ACTTATTTGATGAAGTAAGGCAAATCGAAGGGAGAGTGGTTGAAATCTCCAGACTCCAAGAGAT
ATTCACGGAAAAGGTTTTGCAACAGGAAGCCGAGATTGATAGCATTCACCAGTTAGTGGTAGGA
GCAACTGAAAACATCAAGGAGGGCAATGAGGACATACGAGAGGCCATTAAAAACAACGCTGGTT
TCCGTGTGTGGATCCTCTTCTTCCTGGTGATGTGTTCCTTCTCCCTTCTCTTCCTGGACTGGTA
CGACAGCTAGCTGCCACAGGGTCTGCGGCCTTGGCCAAGGAAGAGTCTCCAGGATCACCTGTTT
GTAACTGAAAGCCTGCTCCATGTGGACCATGTCTGCATACAGCGTCCAGTATCCTGGCATCCTG
TGGGGATGAGCCAGTTCACACCACTCCTCCTTACAAAACACGTGCATGGACAGTCGTTGGGTGG
CACAGGTACCCTTGAGTTCTTTATTTGCACCAAGTGAAATGTAGGAAATTATTGTAGTCAATTT
ACAGTCAATAAAGTACATGTCTACTAGAATACCTGGGGGTGCGCCTGTGTGCTTTGCTTACGTG
GGCACTTTGCAGGGGTGGGGGGAGGTTTCGCAGGACAAGTTTGGCACGCGTTTAGTGCTTGCAT
GTATTGCTCGCAGCTTGGGCCACTGTGCTGCATTCTGTCCACACCTAGGTCAGGATCTTTGTTT
CGAAACACCCTTGATAATAAAACACGCATTTGTCTTGGAA

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Protein Sequences


Protein RefSeqs	XP_005319030	(Get FASTA)	NCBI Sequence Viewer
	XP_021577784	(Get FASTA)	NCBI Sequence Viewer
	XP_021577785	(Get FASTA)	NCBI Sequence Viewer
	XP_021577786	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000013432.3
	ENSSTOP00000028591.1
	ENSSTOP00000029654.1
GenBank Protein	KAG3276910	(Get FASTA)	NCBI Sequence Viewer
	KAG3276911	(Get FASTA)	NCBI Sequence Viewer
	KAG3276912	(Get FASTA)	NCBI Sequence Viewer
	KAG3276913	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_005319030 ⟸ XM_005318973

- UniProtKB:

I3MNY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEYGRMTDAERDQIDQDAQIFMRTCSEAIQQLRTEAHKEIHSQQVKEHRTAVLDFIQDYLKRV
CKLYSEQRAIRVKRVVDKKRLSKLEPEPSTKTRESTFSEKVSQNPSKDSEETLATEEHPEKILT
EAQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNNLFDEVRQIEGRVVEISRLQEIFTEK
VLQQEAEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS

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RefSeq Acc Id:

XP_021577786 ⟸ XM_021722111

- UniProtKB:

I3MNY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEYGRMTDAERDQIDQDAQIFMRTCSEAIQQLRTEAHKEIHSQQVKEHRTAVLDFIQDYLKRV
CKLYSEQRAIRVKRVVDKKRLSKLEPEPSTKTRESTFSEKVSQNPSKDSEETLATEEHPEKILT
EAQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNNLFDEVRQIEGRVVEISRLQEIFTEK
VLQQEAEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS

hide sequence

RefSeq Acc Id:

XP_021577784 ⟸ XM_021722109

- UniProtKB:

I3MNY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEYGRMTDAERDQIDQDAQIFMRTCSEAIQQLRTEAHKEIHSQQVKEHRTAVLDFIQDYLKRV
CKLYSEQRAIRVKRVVDKKRLSKLEPEPSTKTRESTFSEKVSQNPSKDSEETLATEEHPEKILT
EAQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNNLFDEVRQIEGRVVEISRLQEIFTEK
VLQQEAEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS

hide sequence

RefSeq Acc Id:

XP_021577785 ⟸ XM_021722110

- UniProtKB:

I3MNY5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSEYGRMTDAERDQIDQDAQIFMRTCSEAIQQLRTEAHKEIHSQQVKEHRTAVLDFIQDYLKRV
CKLYSEQRAIRVKRVVDKKRLSKLEPEPSTKTRESTFSEKVSQNPSKDSEETLATEEHPEKILT
EAQPELGTWGDGKGEDELSPEEIQMFEQENQRLIGEMNNLFDEVRQIEGRVVEISRLQEIFTEK
VLQQEAEIDSIHQLVVGATENIKEGNEDIREAIKNNAGFRVWILFFLVMCSFSLLFLDWYDS

hide sequence

RefSeq Acc Id:

ENSSTOP00000013432 ⟸ ENSSTOT00000014990

RefSeq Acc Id:

ENSSTOP00000029654 ⟸ ENSSTOT00000040672

RefSeq Acc Id:

ENSSTOP00000028591 ⟸ ENSSTOT00000033829

Protein Domains

SNARE-complex protein Syntaxin-18 N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000014992	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000014990.3	UniProtKB/TrEMBL
	ENSSTOT00000033829.1	UniProtKB/TrEMBL
	ENSSTOT00000040672.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.110	UniProtKB/TrEMBL
InterPro	Syntaxin-18_N	UniProtKB/TrEMBL
	Syntaxin/epimorphin_CS	UniProtKB/TrEMBL
NCBI Gene	Stx18	ENTREZGENE
PANTHER	SYNTAXIN-18	UniProtKB/TrEMBL
	SYNTAXIN-18	UniProtKB/TrEMBL
Pfam	Syntaxin-18_N	UniProtKB/TrEMBL
PROSITE	SYNTAXIN	UniProtKB/TrEMBL
Superfamily-SCOP	SNARE fusion complex	UniProtKB/TrEMBL
UniProt	A0A287D4S4_ICTTR	UniProtKB/TrEMBL
	A0A287D7Z4_ICTTR	UniProtKB/TrEMBL
	I3MNY5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar