Mdfi (MyoD family inhibitor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Mdfi (MyoD family inhibitor) Ictidomys tridecemlineatus
Analyze
Symbol: Mdfi
Name: MyoD family inhibitor
RGD ID: 12591915
Description: ENCODES a protein that exhibits DNA-binding transcription factor binding (ortholog); INVOLVED IN dorsal/ventral axis specification (ortholog); embryonic skeletal system morphogenesis (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH genetic disease (ortholog); infantile Refsum disease (ortholog); Zellweger syndrome (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,683,982 - 45,697,549 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647618,263,194 - 18,275,935 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647618,262,662 - 18,276,159 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
Mdfi
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494645,683,982 - 45,697,549 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647618,263,194 - 18,275,935 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647618,262,662 - 18,276,159 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDFI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38641,637,018 - 41,654,244 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl641,636,882 - 41,654,244 (+)EnsemblGRCh38hg38GRCh38
GRCh37641,604,756 - 41,621,982 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36641,714,231 - 41,729,959 (+)NCBINCBI36Build 36hg18NCBI36
Build 34641,714,230 - 41,729,959NCBI
Celera643,159,635 - 43,175,423 (+)NCBICelera
Cytogenetic Map6p21.1NCBI
HuRef641,324,752 - 41,340,811 (+)NCBIHuRef
CHM1_1641,609,581 - 41,625,365 (+)NCBICHM1_1
T2T-CHM13v2.0641,466,001 - 41,482,783 (+)NCBIT2T-CHM13v2.0
Mdfi
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391748,126,253 - 48,145,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1748,126,253 - 48,145,616 (-)EnsemblGRCm39 Ensembl
GRCm381747,815,328 - 47,834,691 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1747,815,328 - 47,834,691 (-)EnsemblGRCm38mm10GRCm38
MGSCv371747,952,281 - 47,971,640 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361747,278,521 - 47,296,414 (-)NCBIMGSCv36mm8
Celera1751,252,441 - 51,271,814 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1723.99NCBI
Mdfi
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8920,654,359 - 20,672,768 (+)NCBIGRCr8
mRatBN7.2913,156,806 - 13,175,218 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl913,156,866 - 13,175,217 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx921,737,108 - 21,755,325 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0926,802,796 - 26,821,116 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0925,100,495 - 25,118,716 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0915,166,118 - 15,184,469 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl915,166,118 - 15,184,468 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0914,090,319 - 14,108,949 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.498,623,038 - 8,641,388 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera910,909,226 - 10,927,422 (+)NCBICelera
Cytogenetic Map9q12NCBI
Mdfi
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554378,069,326 - 8,081,866 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554378,071,054 - 8,081,811 (+)NCBIChiLan1.0ChiLan1.0
MDFI
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2556,130,206 - 56,147,298 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1651,999,935 - 52,017,319 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0641,222,123 - 41,239,474 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1642,527,805 - 42,545,030 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl642,527,805 - 42,545,030 (+)Ensemblpanpan1.1panPan2
MDFI
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11210,324,499 - 10,339,699 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1210,323,552 - 10,339,697 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1210,354,136 - 10,369,345 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01210,804,583 - 10,819,789 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1210,803,705 - 10,819,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11210,335,575 - 10,350,774 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01210,419,255 - 10,434,468 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01210,513,236 - 10,528,430 (+)NCBIUU_Cfam_GSD_1.0
MDFI
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl736,830,394 - 36,846,993 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1736,829,060 - 36,846,995 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2742,124,089 - 42,142,019 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MDFI
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11730,508,354 - 30,526,065 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1730,509,047 - 30,524,024 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604441,629,354 - 41,649,335 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdfi
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475417,375,714 - 17,387,919 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475417,377,369 - 17,389,349 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000029173   ⟹   ENSSTOP00000020544
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647618,263,194 - 18,275,935 (-)Ensembl
RefSeq Acc Id: XM_040282619   ⟹   XP_040138553
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494645,683,982 - 45,697,549 (+)NCBI
RefSeq Acc Id: XM_040282620   ⟹   XP_040138554
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494645,683,982 - 45,697,549 (+)NCBI
Protein Sequences
Protein RefSeqs XP_040138553 (Get FASTA)   NCBI Sequence Viewer  
  XP_040138554 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000020544.2
GenBank Protein KAG3289436 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040138553   ⟸   XM_040282619
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040138554   ⟸   XM_040282620
- Peptide Label: isoform X2
- UniProtKB: I3N848 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000020544   ⟸   ENSSTOT00000029173


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024420 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000029173.2 UniProtKB/TrEMBL
InterPro MDFI/MDFIC UniProtKB/TrEMBL
NCBI Gene Mdfi ENTREZGENE
PANTHER MYOD FAMILY INHIBITOR UniProtKB/TrEMBL
  PTHR15304 UniProtKB/TrEMBL
Pfam MDFI UniProtKB/TrEMBL
UniProt I3N848 ENTREZGENE, UniProtKB/TrEMBL