Pipox (pipecolic acid and sarcosine oxidase) - Rat Genome Database

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Gene: Pipox (pipecolic acid and sarcosine oxidase) Ictidomys tridecemlineatus
Analyze
Symbol: Pipox
Name: pipecolic acid and sarcosine oxidase
RGD ID: 12590959
Description: ENCODES a protein that exhibits L-pipecolate oxidase activity (inferred); oxidoreductase activity (inferred); sarcosine oxidase activity (inferred); INVOLVED IN L-lysine catabolic process to acetyl-CoA via L-pipecolate (inferred); tetrahydrofolate metabolic process (inferred); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH peroxisomal disease (ortholog); FOUND IN peroxisome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Also known as: peroxisomal sarcosine oxidase; pipecolic acid and sarcosine oxidase, transcript variant X1; pipecolic acid and sarcosine oxidase, transcript variant X2; pipecolic acid and sarcosine oxidase, transcript variant X3; pipecolic acid and sarcosine oxidase, transcript variant X4; pipecolic acid and sarcosine oxidase, transcript variant X5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,262,784 - 42,374,689 (+)NCBI
SpeTri2.0NW_0049365385,218,097 - 5,252,579 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
peroxisome  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Pipox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560242,262,784 - 42,374,689 (+)NCBI
SpeTri2.0NW_0049365385,218,097 - 5,252,579 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PIPOX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1728,950,513 - 29,057,216 (+)EnsemblGRCh38hg38GRCh38
GRCh381729,043,141 - 29,057,227 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371727,370,159 - 27,384,234 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361724,394,044 - 24,408,362 (+)NCBINCBI36hg18NCBI36
Build 341724,394,043 - 24,408,362NCBI
Celera1724,229,276 - 24,243,594 (+)NCBI
Cytogenetic Map17q11.2NCBI
HuRef1723,578,154 - 23,592,473 (+)NCBIHuRef
CHM1_11727,432,423 - 27,446,741 (+)NCBICHM1_1
Pipox
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391177,771,440 - 77,784,698 (-)NCBIGRCm39mm39
GRCm39 Ensembl1177,771,441 - 77,784,922 (-)Ensembl
GRCm381177,880,614 - 77,893,872 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1177,880,615 - 77,894,096 (-)EnsemblGRCm38mm10GRCm38
MGSCv371177,694,117 - 77,707,374 (-)NCBIGRCm37mm9NCBIm37
MGSCv361177,696,810 - 77,709,979 (-)NCBImm8
Celera1185,380,241 - 85,393,553 (-)NCBICelera
Cytogenetic Map11B5NCBI
cM Map1146.74NCBI
Pipox
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21062,769,874 - 62,783,484 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1062,769,900 - 62,782,370 (-)Ensembl
Rnor_6.01064,951,986 - 64,964,865 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1064,952,119 - 64,964,862 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01066,660,848 - 66,673,727 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41063,920,814 - 63,933,307 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11063,934,437 - 63,946,930 (-)NCBI
Celera1061,749,538 - 61,762,034 (-)NCBICelera
Cytogenetic Map10q25NCBI
Pipox
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554814,128,509 - 4,143,334 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554814,128,503 - 4,225,027 (-)NCBIChiLan1.0ChiLan1.0
PIPOX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11728,225,831 - 28,240,210 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1728,225,831 - 28,240,210 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01727,717,083 - 27,820,776 (-)NCBIMhudiblu_PPA_v0panPan3
PIPOX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1943,200,343 - 43,212,288 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl943,200,371 - 43,212,288 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha942,270,936 - 42,367,312 (+)NCBI
ROS_Cfam_1.0943,933,328 - 44,029,372 (+)NCBI
ROS_Cfam_1.0 Ensembl944,017,455 - 44,130,561 (+)Ensembl
UMICH_Zoey_3.1942,801,125 - 42,812,862 (+)NCBI
UNSW_CanFamBas_1.0943,008,746 - 43,105,371 (+)NCBI
UU_Cfam_GSD_1.0943,087,750 - 43,184,119 (+)NCBI
LOC110255229
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1245,257,188 - 45,322,767 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11245,256,806 - 45,270,755 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PIPOX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11622,805,369 - 22,820,015 (+)NCBIChlSab1.1chlSab2
ChlSab1.11622,805,369 - 22,820,015 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1622,805,740 - 22,820,537 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660757,286,003 - 7,301,126 (-)NCBIVero_WHO_p1.0
Pipox
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247861,594,988 - 1,615,210 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005327846   ⟹   XP_005327903
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,350,107 - 42,364,346 (+)NCBI
SpeTri2.0NW_0049365385,228,459 - 5,242,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021728110   ⟹   XP_021583785
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,340,125 - 42,364,346 (+)NCBI
SpeTri2.0NW_0049365385,218,097 - 5,242,231 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040269202   ⟹   XP_040125136
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,262,784 - 42,364,346 (+)NCBI
RefSeq Acc Id: XM_040269203   ⟹   XP_040125137
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,262,784 - 42,374,689 (+)NCBI
RefSeq Acc Id: XM_040269204   ⟹   XP_040125138
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,262,784 - 42,364,346 (+)NCBI
RefSeq Acc Id: XM_040269205   ⟹   XP_040125139
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,262,784 - 42,374,689 (+)NCBI
RefSeq Acc Id: XM_040269206   ⟹   XP_040125140
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,312,457 - 42,364,346 (+)NCBI
RefSeq Acc Id: XM_040269207   ⟹   XP_040125141
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,312,457 - 42,364,346 (+)NCBI
RefSeq Acc Id: XM_040269208   ⟹   XP_040125142
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,262,784 - 42,364,346 (+)NCBI
RefSeq Acc Id: XM_040269209   ⟹   XP_040125143
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,312,676 - 42,364,346 (+)NCBI
RefSeq Acc Id: XR_005726454
RefSeq Status:
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560242,262,784 - 42,374,689 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005327903   ⟸   XM_005327846
- Peptide Label: isoform X6
- UniProtKB: I3M2G6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021583785   ⟸   XM_021728110
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_040125137   ⟸   XM_040269203
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040125139   ⟸   XM_040269205
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040125142   ⟸   XM_040269208
- Peptide Label: isoform X8
RefSeq Acc Id: XP_040125136   ⟸   XM_040269202
- Peptide Label: isoform X1
RefSeq Acc Id: XP_040125138   ⟸   XM_040269204
- Peptide Label: isoform X3
RefSeq Acc Id: XP_040125140   ⟸   XM_040269206
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040125141   ⟸   XM_040269207
- Peptide Label: isoform X7
RefSeq Acc Id: XP_040125143   ⟸   XM_040269209
- Peptide Label: isoform X8
Protein Domains
DAO


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003537 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000003168 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003538 UniProtKB/TrEMBL
Gene3D-CATH 3.50.50.60 UniProtKB/TrEMBL
InterPro FAD-dep_OxRdtase UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  SoxA_mon UniProtKB/TrEMBL
NCBI Gene Pipox ENTREZGENE
Pfam DAO UniProtKB/TrEMBL
Superfamily-SCOP SSF51905 UniProtKB/TrEMBL
TIGRFAMs soxA_mon UniProtKB/TrEMBL
UniProt I3M2G6 ENTREZGENE, UniProtKB/TrEMBL