Pipox (pipecolic acid and sarcosine oxidase)

	Submit Data \| Help \| Video Tutorials \| News \| Publications \| Download \| REST API \| Citing RGD \| Contact
	Search RGD Grant Resources Citing RGD About Us Contact Us Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease Find Models new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive Pathways Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
	Advanced Search (OLGA)

Gene: Pipox (pipecolic acid and sarcosine oxidase) Ictidomys tridecemlineatus

Analyze

Symbol:

Pipox

Name:

pipecolic acid and sarcosine oxidase

RGD ID:

12590959

Description:

ENCODES a protein that exhibits flavin adenine dinucleotide binding (inferred); L-pipecolate oxidase activity (inferred); oxidoreductase activity (inferred); INVOLVED IN L-lysine catabolic process to acetyl-CoA via L-pipecolate (inferred); PARTICIPATES IN 2-aminoadipic 2-oxoadipic aciduria pathway; glutaric aciduria type I pathway; hyperlysinemia pathway; ASSOCIATED WITH genetic disease (ortholog); peroxisomal disease (ortholog); FOUND IN peroxisome (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

peroxisomal sarcosine oxidase; pipecolic acid and sarcosine oxidase, transcript variant X1; pipecolic acid and sarcosine oxidase, transcript variant X2; pipecolic acid and sarcosine oxidase, transcript variant X3; pipecolic acid and sarcosine oxidase, transcript variant X4; pipecolic acid and sarcosine oxidase, transcript variant X5

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	42,262,784 - 42,374,689 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	5,228,418 - 5,242,668 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936538	5,218,097 - 5,252,579 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

peroxisomal disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

L-lysine catabolic process to acetyl-CoA via L-pipecolate (IEA)

Cellular Component

peroxisome (IEA)

Molecular Function

flavin adenine dinucleotide binding (IEA)

L-pipecolate oxidase activity (IEA)

oxidoreductase activity (IEA)

protein binding (ISO)

sarcosine oxidase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

2-aminoadipic 2-oxoadipic aciduria pathway (ISO)

glutaric aciduria type I pathway (ISO)

hyperlysinemia pathway (ISO)

lysine degradation pathway (ISO)

saccharopinuria pathway (ISO)

References

Genomics

Comparative Map Data

Pipox
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	42,262,784 - 42,374,689 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936538	5,228,418 - 5,242,668 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936538	5,218,097 - 5,252,579 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PIPOX
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	29,043,141 - 29,057,216 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	17	28,950,513 - 29,057,216 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	27,370,159 - 27,384,234 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	24,394,044 - 24,408,362 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	24,394,043 - 24,408,362	NCBI
Celera	17	24,229,276 - 24,243,594 (+)	NCBI		Celera
Cytogenetic Map	17	q11.2	NCBI
HuRef	17	23,578,154 - 23,592,473 (+)	NCBI		HuRef
CHM1_1	17	27,432,423 - 27,446,741 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	29,985,859 - 29,999,934 (+)	NCBI		T2T-CHM13v2.0

Pipox
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	77,771,440 - 77,784,698 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	77,771,441 - 77,784,922 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	77,880,614 - 77,893,872 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	77,880,615 - 77,894,096 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	77,694,117 - 77,707,374 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	77,696,810 - 77,709,979 (-)	NCBI		MGSCv36	mm8
Celera	11	85,380,241 - 85,393,553 (-)	NCBI		Celera
Cytogenetic Map	11	B5	NCBI
cM Map	11	46.74	NCBI

Pipox
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	10	62,769,874 - 62,783,484 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	62,769,900 - 62,782,370 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	67,401,459 - 67,413,965 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	10	66,906,831 - 66,919,336 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	10	62,377,262 - 62,389,762 (-)	NCBI	Rnor_WKY
Rnor_6.0	10	64,951,986 - 64,964,865 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	64,952,119 - 64,964,862 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	66,660,848 - 66,673,727 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	63,920,814 - 63,933,307 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	63,934,437 - 63,946,930 (-)	NCBI
Celera	10	61,749,538 - 61,762,034 (-)	NCBI		Celera
Cytogenetic Map	10	q25	NCBI

Pipox
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955481	4,128,509 - 4,143,334 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955481	4,128,503 - 4,225,027 (-)	NCBI	ChiLan1.0	ChiLan1.0

PIPOX
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	17	37,281,501 - 37,385,200 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	27,717,083 - 27,820,776 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	28,225,831 - 28,240,210 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	28,225,831 - 28,240,210 (-)	Ensembl	panpan1.1		panPan2

PIPOX
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	43,200,343 - 43,212,288 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	43,200,371 - 43,212,288 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	42,270,936 - 42,367,312 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	43,933,328 - 44,029,372 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	44,017,455 - 44,130,561 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	42,801,125 - 42,812,862 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	43,008,746 - 43,105,371 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	43,087,750 - 43,184,119 (+)	NCBI		UU_Cfam_GSD_1.0

PIPOX
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	45,257,188 - 45,322,767 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	45,256,806 - 45,270,755 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PIPOX
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	22,805,369 - 22,820,015 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	22,805,740 - 22,820,537 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	7,286,003 - 7,301,126 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pipox
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624786	1,600,395 - 1,616,290 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624786	1,594,988 - 1,615,210 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005327846	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728107	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728109	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728110	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269202	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269203	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269208	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040269209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005726454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSTOT00000003538 ⟹ ENSSTOP00000003168

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936538	5,228,418 - 5,242,668 (+)	Ensembl

RefSeq Acc Id:

XM_005327846 ⟹ XP_005327903

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,350,107 - 42,364,346 (+)	NCBI
SpeTri2.0	NW_004936538	5,228,459 - 5,242,231 (+)	NCBI

Sequence:

show sequence

AAGGAGGAAGGAGCCGGACACATCCCCAGGGGATTGTGGGAACACTGGCCAAGCTGGACTTTGC
CTTCCTGCTCTCCCTGCAGCCTGGTGCTGCCTTTGTTTGCCGTCTCCTCCGTGGGCTCTGTGGC
CAGAGGGCTAAGTGGGCATCATGGGTACTCAGAAAGTTCTCTGGGATGCCATTGTGATGGGGGC
AGGCATCCAGGGCTGCTTCACTGCGTACCACCTGGCCAAACACGGGAAAAGAGTCCTCCTGCTG
GAGCAGTTCTTTCTTCCACACTCCCGAGGAAGCTCCCATGGACAGAGTCGCATAATCCGAAAGG
CCTACACTGAAGACTTCTACACTAAAATGATGGATGAGAGCTACCGGATTTGGGCCCAGCTGGA
GCAGGAGACTGGAACCCAGCTGCACAGGCAGACTCAACTACTGCTGCTGGCATTGAAGGAGAAT
CCAGAACTAAAGACAATACAGGCCACTCTGTCAAGGCACGGGATAGAACACGAGTATCTTTCAT
CTGGAGAACTAAAGCAACGTTTCCCAAATATTCAGTTCACCAGGGGAGAAGTAGGGCTCTTGGA
CAAGTCCGGAGGTGTCCTCTATGCTGACAAGGCCCTCAGGGTCCTCCAGGAAGCGATTCGCCAT
CTAGGAGGCACAGTGCAGGATGGGGAGAAGGTGATGGAGATAAGACCCGGGCAACCAGTCACAG
TGAAAACCACTTCTGGGAGCTACCAAGCCAAGAGCGTGATCATTACTGCAGGTCCTTGGACCAA
CCAGCTCCTCCGTCACCTGGGAATTGAGTTACCTCTCCAGACACTGCGGATCAATGTGTGTTAC
TGGCGAGAGAAAGTTCCTGGGAGCTACAGTGTGTCCAAAGCCTTTCCATGCTTCCTAAGCCTCG
ACCTGGCTCCCCACCACATCTATGGGCTACCTGCGGGAGAGTACCCAGGGCTGATGAAGGTCTG
CTATCACCATGGCAACAGTGTGGACCCTGAGGAGCGGGACTGCCCCACAGCCTTCTCAGACATC
CAAGATGTCCAGATCCTGTGCCGCTTTGTCAGAGACCACTTACCTGGCCTGAGGCCAGAGCCCG
ACATCATGGAGCATTGCATGTACACGAACACTCCTGATAAGAATTTTATTCTCGATCGCCACCC
GAAGTATGACAACATTGTCATTGGTGCTGGATTCTCTGGGCATGGATTCAAGCTGTCCCCTGTT
GTGGGGAAGATTCTGTATGAATTAAGCATGAAATTAACACCGTCCTATGATCTGACACCTTTTC
GAATCAGCCGATTCTCTGGCCTGGGCAAAGCCCATCTTTGACCCCTGACCACCAGCCCCCCTTC
TGTGCTCAGGAGCCCTCTGCTGGGGAGGACTTCTCAGATGGAAGAAAGGCCCT

hide sequence

RefSeq Acc Id:

XM_021728110 ⟹ XP_021583785

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,340,125 - 42,364,346 (+)	NCBI
SpeTri2.0	NW_004936538	5,218,097 - 5,242,231 (+)	NCBI

Sequence:

show sequence

GCTGAGGATCGAACCCTGGCCGCACGCATGCAAGCAAGAAAATAAAGGTGGACAAATCTGAACG
GCGGGACTGTGCGTGAGTCGGGTGCAGGGAGTGGAGCCAAGATTCTGTCTGGGAGAGGAGCTGC
CAAGAAGGAAAGAAGCAGGAAGCCATTGGTTCCTCCTCACCATGCCACTGAGAACCCAGCATGG
GTCCTTAAGTTCTTTCTTCCACACTCCCGAGGAAGCTCCCATGGACAGAGTCGCATAATCCGAA
AGGCCTACACTGAAGACTTCTACACTAAAATGATGGATGAGAGCTACCGGATTTGGGCCCAGCT
GGAGCAGGAGACTGGAACCCAGCTGCACAGGCAGACTCAACTACTGCTGCTGGCATTGAAGGAG
AATCCAGAACTAAAGACAATACAGGCCACTCTGTCAAGGCACGGGATAGAACACGAGTATCTTT
CATCTGGAGAACTAAAGCAACGTTTCCCAAATATTCAGTTCACCAGGGGAGAAGTAGGGCTCTT
GGACAAGTCCGGAGGTGTCCTCTATGCTGACAAGGCCCTCAGGGTCCTCCAGGAAGCGATTCGC
CATCTAGGAGGCACAGTGCAGGATGGGGAGAAGGTGATGGAGATAAGACCCGGGCAACCAGTCA
CAGTGAAAACCACTTCTGGGAGCTACCAAGCCAAGAGCGTGATCATTACTGCAGGTCCTTGGAC
CAACCAGCTCCTCCGTCACCTGGGAATTGAGTTACCTCTCCAGACACTGCGGATCAATGTGTGT
TACTGGCGAGAGAAAGTTCCTGGGAGCTACAGTGTGTCCAAAGCCTTTCCATGCTTCCTAAGCC
TCGACCTGGCTCCCCACCACATCTATGGGCTACCTGCGGGAGAGTACCCAGGGCTGATGAAGGT
CTGCTATCACCATGGCAACAGTGTGGACCCTGAGGAGCGGGACTGCCCCACAGCCTTCTCAGAC
ATCCAAGATGTCCAGATCCTGTGCCGCTTTGTCAGAGACCACTTACCTGGCCTGAGGCCAGAGC
CCGACATCATGGAGCATTGCATGTACACGAACACTCCTGATAAGAATTTTATTCTCGATCGCCA
CCCGAAGTATGACAACATTGTCATTGGTGCTGGATTCTCTGGGCATGGATTCAAGCTGTCCCCT
GTTGTGGGGAAGATTCTGTATGAATTAAGCATGAAATTAACACCGTCCTATGATCTGACACCTT
TTCGAATCAGCCGATTCTCTGGCCTGGGCAAAGCCCATCTTTGACCCCTGACCACCAGCCCCCC
TTCTGTGCTCAGGAGCCCTCTGCTGGGGAGGACTTCTCAGATGGAAGAAAGGCCCT

hide sequence

RefSeq Acc Id:

XM_040269202 ⟹ XP_040125136

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,262,784 - 42,364,346 (+)	NCBI

RefSeq Acc Id:

XM_040269203 ⟹ XP_040125137

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,262,784 - 42,374,689 (+)	NCBI

RefSeq Acc Id:

XM_040269204 ⟹ XP_040125138

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,262,784 - 42,364,346 (+)	NCBI

RefSeq Acc Id:

XM_040269205 ⟹ XP_040125139

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,262,784 - 42,374,689 (+)	NCBI

RefSeq Acc Id:

XM_040269206 ⟹ XP_040125140

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,312,457 - 42,364,346 (+)	NCBI

RefSeq Acc Id:

XM_040269207 ⟹ XP_040125141

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,312,457 - 42,364,346 (+)	NCBI

RefSeq Acc Id:

XM_040269208 ⟹ XP_040125142

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,262,784 - 42,364,346 (+)	NCBI

RefSeq Acc Id:

XM_040269209 ⟹ XP_040125143

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,312,676 - 42,364,346 (+)	NCBI

RefSeq Acc Id:

XR_005726454

RefSeq Status:

Type:

NON-CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	42,262,784 - 42,374,689 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005327903	(Get FASTA)	NCBI Sequence Viewer
	XP_021583785	(Get FASTA)	NCBI Sequence Viewer
	XP_040125136	(Get FASTA)	NCBI Sequence Viewer
	XP_040125137	(Get FASTA)	NCBI Sequence Viewer
	XP_040125138	(Get FASTA)	NCBI Sequence Viewer
	XP_040125139	(Get FASTA)	NCBI Sequence Viewer
	XP_040125140	(Get FASTA)	NCBI Sequence Viewer
	XP_040125141	(Get FASTA)	NCBI Sequence Viewer
	XP_040125142	(Get FASTA)	NCBI Sequence Viewer
	XP_040125143	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3269632	(Get FASTA)	NCBI Sequence Viewer
	KAG3269633	(Get FASTA)	NCBI Sequence Viewer
	KAG3269634	(Get FASTA)	NCBI Sequence Viewer
	KAG3269635	(Get FASTA)	NCBI Sequence Viewer
	KAG3269636	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	XP_005327903 ⟸ XM_005327846
- Peptide Label:	isoform X6
- UniProtKB:	I3M2G6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGTQKVLWDAIVMGAGIQGCFTAYHLAKHGKRVLLLEQFFLPHSRGSSHGQSRIIRKAYTEDFY TKMMDESYRIWAQLEQETGTQLHRQTQLLLLALKENPELKTIQATLSRHGIEHEYLSSGELKQR FPNIQFTRGEVGLLDKSGGVLYADKALRVLQEAIRHLGGTVQDGEKVMEIRPGQPVTVKTTSGS YQAKSVIITAGPWTNQLLRHLGIELPLQTLRINVCYWREKVPGSYSVSKAFPCFLSLDLAPHHI YGLPAGEYPGLMKVCYHHGNSVDPEERDCPTAFSDIQDVQILCRFVRDHLPGLRPEPDIMEHCM YTNTPDKNFILDRHPKYDNIVIGAGFSGHGFKLSPVVGKILYELSMKLTPSYDLTPFRISRFSG LGKAHL hide sequence

RefSeq Acc Id:

XP_021583785 ⟸ XM_021728110

- Peptide Label:

isoform X8

- Sequence:

show sequence

MMDESYRIWAQLEQETGTQLHRQTQLLLLALKENPELKTIQATLSRHGIEHEYLSSGELKQRFP
NIQFTRGEVGLLDKSGGVLYADKALRVLQEAIRHLGGTVQDGEKVMEIRPGQPVTVKTTSGSYQ
AKSVIITAGPWTNQLLRHLGIELPLQTLRINVCYWREKVPGSYSVSKAFPCFLSLDLAPHHIYG
LPAGEYPGLMKVCYHHGNSVDPEERDCPTAFSDIQDVQILCRFVRDHLPGLRPEPDIMEHCMYT
NTPDKNFILDRHPKYDNIVIGAGFSGHGFKLSPVVGKILYELSMKLTPSYDLTPFRISRFSGLG
KAHL

hide sequence

RefSeq Acc Id:	XP_040125137 ⟸ XM_040269203
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040125139 ⟸ XM_040269205
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_040125142 ⟸ XM_040269208
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_040125136 ⟸ XM_040269202
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040125138 ⟸ XM_040269204
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_040125140 ⟸ XM_040269206
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_040125141 ⟸ XM_040269207
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_040125143 ⟸ XM_040269209
- Peptide Label:	isoform X8

RefSeq Acc Id:

ENSSTOP00000003168 ⟸ ENSSTOT00000003538

Protein Domains

FAD dependent oxidoreductase

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000003537	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSTOP00000003168	ENTREZGENE
	ENSSTOP00000003168.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000003538.3	UniProtKB/TrEMBL
Gene3D-CATH	3.50.50.60	UniProtKB/TrEMBL
	D-Amino Acid Oxidase, subunit A, domain 2	UniProtKB/TrEMBL
InterPro	FAD-dep_OxRdtase	UniProtKB/TrEMBL
	FAD/NAD-bd_sf	UniProtKB/TrEMBL
	MTOX	UniProtKB/TrEMBL
	SoxA_mon	UniProtKB/TrEMBL
NCBI Gene	Pipox	ENTREZGENE
PANTHER	PEROXISOMAL SARCOSINE OXIDASE	UniProtKB/TrEMBL
	PTHR10961	UniProtKB/TrEMBL
Pfam	DAO	UniProtKB/TrEMBL
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
Superfamily-SCOP	FAD-linked reductases, C-terminal domain	UniProtKB/TrEMBL
	SSF51905	UniProtKB/TrEMBL
TIGRFAMs	soxA_mon	UniProtKB/TrEMBL
UniProt	I3M2G6	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB