Pdcl (phosducin like) - Rat Genome Database

Name: Pdcl
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pdcl (phosducin like) Ictidomys tridecemlineatus

Analyze

Symbol:

Pdcl

Name:

phosducin like

RGD ID:

12590931

Description:

ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN heterotrimeric G-protein complex assembly (ortholog); negative regulation of protein refolding (ortholog); protein folding (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

RGD Orthologs

Human

Mouse

Rat

Chinchilla

Bonobo

Dog

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDCL (phosducin like)	NCBI	Ortholog
Mus musculus (house mouse):	Pdcl (phosducin-like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pdcl (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdcl (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDCL (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDCL (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDCL (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDCL (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdcl (phosducin like)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	191,538,715 - 191,555,000 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	11,306,778 - 11,323,571 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936487	11,309,073 - 11,323,529 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

heterotrimeric G-protein complex assembly (IEA,ISO)

negative regulation of protein refolding (ISO)

positive regulation of smoothened signaling pathway (IEA)

protein folding (ISO)

regulation of G protein-coupled receptor signaling pathway (IEA)

visual perception (IEA,ISO)

Cellular Component

cytoplasm (IEA)

Molecular Function

protein binding (ISO)

protein-containing complex binding (ISO)

References

Genomics

Comparative Map Data

Pdcl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	191,538,715 - 191,555,000 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	11,306,778 - 11,323,571 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936487	11,309,073 - 11,323,529 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDCL
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	122,818,097 - 122,828,588 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	9	122,798,389 - 122,828,588 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	9	125,580,376 - 125,590,867 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	124,620,444 - 124,630,661 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	9	122,659,343 - 122,670,464	NCBI
Celera	9	96,228,719 - 96,239,278 (-)	NCBI		Celera
Cytogenetic Map	9	q33.2	NCBI
HuRef	9	95,194,963 - 95,205,522 (-)	NCBI		HuRef
CHM1_1	9	125,728,203 - 125,738,762 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	9	135,015,449 - 135,025,940 (-)	NCBI		T2T-CHM13v2.0

Pdcl
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	37,240,086 - 37,249,832 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	37,240,086 - 37,249,344 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	37,350,074 - 37,359,820 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	37,350,074 - 37,359,332 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	37,205,594 - 37,214,852 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	37,172,083 - 37,181,241 (-)	NCBI		MGSCv36	mm8
Celera	2	37,034,073 - 37,043,333 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI

Pdcl
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	3	21,110,165 - 21,119,763 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	21,110,167 - 21,119,715 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	24,578,973 - 24,587,995 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	3	33,163,935 - 33,172,957 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	3	30,974,724 - 30,983,752 (-)	NCBI	Rnor_WKY
Rnor_6.0	3	21,602,349 - 21,609,821 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	21,601,816 - 21,609,853 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	26,841,569 - 26,849,041 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	17,107,429 - 17,116,454 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	17,003,800 - 17,012,826 (-)	NCBI
Celera	3	19,546,249 - 19,555,274 (-)	NCBI		Celera
Cytogenetic Map	3	q11	NCBI

Pdcl
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955419	5,121,535 - 5,134,087 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955419	5,123,490 - 5,132,092 (+)	NCBI	ChiLan1.0	ChiLan1.0

PDCL
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	9	16,519,929 - 16,530,246 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	93,949,613 - 93,959,913 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	122,283,877 - 122,294,174 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	122,283,877 - 122,294,174 (-)	Ensembl	panpan1.1		panPan2

PDCL
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	59,945,988 - 59,955,295 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	59,947,559 - 59,954,040 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	59,141,008 - 59,151,402 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	60,865,030 - 60,875,272 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	60,865,050 - 60,875,466 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	59,623,931 - 59,634,368 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	59,939,017 - 59,949,339 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	60,032,008 - 60,042,696 (+)	NCBI		UU_Cfam_GSD_1.0

PDCL
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	263,747,703 - 263,759,543 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	263,747,900 - 263,759,610 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	297,212,592 - 297,222,610 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDCL
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	15,300,100 - 15,309,079 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	12	15,299,749 - 15,310,729 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666079	755,225 - 763,976 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdcl
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	12,088,762 - 12,095,067 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624760	12,088,965 - 12,096,994 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005320935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSSTOT00000010652 ⟹ ENSSTOP00000009563

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936487	11,306,778 - 11,323,571 (-)	Ensembl

RefSeq Acc Id:

XM_005320935 ⟹ XP_005320992

RefSeq Status:

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024404947	191,538,715 - 191,555,000 (-)	NCBI
SpeTri2.0	NW_004936487	11,309,073 - 11,323,529 (-)	NCBI

Sequence:

show sequence

GCGTCCGCCATGACGCAGGAGGGCCGCCTCATTGGTCCGCGCAGTCAGGACTCCGGCAGCTTTT
CTCTTGGGTGCTCTGGGCGCCGACCCACTTCTCTTCCTCTAAGTCAGCGCTCCGTTCTTTCTGG
TGCCCGGAGCTGCTAGCCCAAAGGGATCCAGACTGAGCTAGTCCGGGCATCATGACAACCCTGG
ATGACAAGTTGCTGGGGGAGAAACTGCAGTACTACTACAGCAGCAGTGAGGATGAGGACAGTGA
CCATGAAGACAAGGACAGAGGCAGGGGTGCCCCAGCCAGCAGTTCCATGCCTGTGGAGGCTGAG
CTGGCAGGTGAAGGCATCTCAGTTAATACAGGTCCAAAAGGTGTGATCAATGACTGGCGCCGCT
ACAAGCAATTGGAAACTGAGCAGAGAGAGGAGCAGTGCCGGGAGATGGAAAGGCTGATCAAGAA
GCTGTCTATGACCTGCAGGTCCCATTTGGATGAAGAAGAGGAGCAACAGAAACAGAAGGACCTC
CAGGAAAAGATCAGTGGGAAGATGACTCTGAAGGAGTTTGCCATGATGAATGAGGACCAAGATG
ATGAAGAATTTCTACAGCAGTATCGGAAACAGAGGATGGAAGAGATGCGGCAGCAGCTCCACAA
GGGGCCCCAGTTCAAACAGGTTTTTGAAATCCCTAGTGGAGAAGGGTTTTTAGACATGATTGAT
AAAGAACAGAAAAGCACCCTCATCATGGTCCATATTTATGAGGATGGCATTCCAGGGACTGAAG
CCATGAATGGCTGCATGATCTGCCTGGCTGGGGAGTACCCAGCTGTCAAATTCTGTCGGGTGAA
GAGCTCGGTCATTGGGGCCAGCAGTCGGTTTACCCGGAATGCCCTTCCTGCCCTGCTGATCTAC
AAGGGGGGTGAATTGATTGGCAATTTTGTGCGCATTACTGACCAGCTGGGGGAAGATTTCTTTG
CTGTGGACCTTGAAGCTTTTCTACAGGAATTTGGATTACTCCCTGAAAAGGAAGTCTTGGTGCT
GACATCTGTGCGTAACTCTGCCACCTGTCACAGTGAAGACAGCGATCTGGAAATAGATTGAACG
GATGGTCTAGTTGCATAGATTTCTCATTGTTTGGGCTGGAAGATACATGTCTGTGTTTATTTTT
GTTCCTTCTTCGTCTTCTGACTTTTCAGCTGTTCTTTGTAGTCCTTTTAGTTATCATAGAAAGT
CAAGAAATTCTTAGATTAGATCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005320992	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3287912	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

XP_005320992 ⟸ XM_005320935

- UniProtKB:

I3MFW8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTTLDDKLLGEKLQYYYSSSEDEDSDHEDKDRGRGAPASSSMPVEAELAGEGISVNTGPKGVIN
DWRRYKQLETEQREEQCREMERLIKKLSMTCRSHLDEEEEQQKQKDLQEKISGKMTLKEFAMMN
EDQDDEEFLQQYRKQRMEEMRQQLHKGPQFKQVFEIPSGEGFLDMIDKEQKSTLIMVHIYEDGI
PGTEAMNGCMICLAGEYPAVKFCRVKSSVIGASSRFTRNALPALLIYKGGELIGNFVRITDQLG
EDFFAVDLEAFLQEFGLLPEKEVLVLTSVRNSATCHSEDSDLEID

hide sequence

RefSeq Acc Id:

ENSSTOP00000009563 ⟸ ENSSTOT00000010652

Protein Domains

Phosducin thioredoxin-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000010651	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSSTOP00000009563	ENTREZGENE
	ENSSTOP00000009563.2	UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000010652.3	UniProtKB/TrEMBL
Gene3D-CATH	1.10.168.10	UniProtKB/TrEMBL
	Glutaredoxin	UniProtKB/TrEMBL
InterPro	Phosducin	UniProtKB/TrEMBL
	Phosducin_N_dom_sf	UniProtKB/TrEMBL
	Phosducin_thioredoxin-like_dom	UniProtKB/TrEMBL
	Thioredoxin-like_sf	UniProtKB/TrEMBL
NCBI Gene	Pdcl	ENTREZGENE
PANTHER	PHOSDUCIN-LIKE PROTEIN	UniProtKB/TrEMBL
	PHOSDUCIN-LIKE PROTEIN	UniProtKB/TrEMBL
Pfam	Phosducin	UniProtKB/TrEMBL
PRINTS	PHOSDUCIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52833	UniProtKB/TrEMBL
UniProt	I3MFW8	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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