Cfap96 (cilia and flagella associated protein 96) - Rat Genome Database

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Gene: Cfap96 (cilia and flagella associated protein 96) Ictidomys tridecemlineatus
Analyze
Symbol: Cfap96
Name: cilia and flagella associated protein 96 (Ensembl:chromosome unknown C4orf47 homolog)
RGD ID: 12590211
Description: ASSOCIATED WITH autistic disorder (ortholog); Beukes hip dysplasia (ortholog); developmental and epileptic encephalopathy 1 (ortholog); FOUND IN 9+0 non-motile cilium (inferred); centrosome (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: chromosome unknown C4orf47 homolog; chromosome unknown open reading frame, human C4orf47; CUNH4orf47; LOC101971718; UPF0602 protein C4orf47 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494334,184,084 - 34,200,991 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365543,908,413 - 3,925,942 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365543,908,570 - 3,925,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cfap96
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494334,184,084 - 34,200,991 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365543,908,413 - 3,925,942 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365543,908,570 - 3,925,957 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP96
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384185,408,434 - 185,449,826 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4185,426,249 - 185,449,826 (+)EnsemblGRCh38hg38GRCh38
GRCh374186,347,408 - 186,370,980 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364186,584,397 - 186,607,976 (+)NCBINCBI36Build 36hg18NCBI36
Celera4183,676,735 - 183,698,471 (+)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4182,103,998 - 182,124,561 (+)NCBIHuRef
CHM1_14186,326,952 - 186,347,263 (+)NCBICHM1_1
T2T-CHM13v2.04188,748,560 - 188,793,104 (+)NCBIT2T-CHM13v2.0
Cfap96
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39846,387,980 - 46,428,290 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl846,406,643 - 46,428,477 (-)EnsemblGRCm39 Ensembl
GRCm38845,939,196 - 45,975,488 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl845,953,606 - 45,975,440 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 Ensembl845,953,606 - 45,975,252 (-)EnsemblGRCm38mm10GRCm38
MGSCv37847,038,960 - 47,060,606 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36847,452,423 - 47,474,069 (-)NCBIMGSCv36mm8
Celera848,636,534 - 48,658,134 (-)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map825.94NCBI
Cfap96
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81653,023,623 - 53,048,176 (+)NCBIGRCr8
mRatBN7.21646,291,075 - 46,315,616 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1646,291,311 - 46,315,625 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01649,485,022 - 49,509,756 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1649,485,256 - 49,509,767 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01649,211,727 - 49,236,305 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41649,573,429 - 49,596,596 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1644,289,273 - 44,313,879 (+)NCBICelera
Cytogenetic Map16q11NCBI
Cfap96
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540323,619,399 - 23,634,731 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540323,617,764 - 23,634,689 (-)NCBIChiLan1.0ChiLan1.0
CFAP96
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23183,161,235 - 183,184,786 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14183,509,622 - 183,533,153 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04177,589,308 - 177,612,834 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14189,805,849 - 189,828,919 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4189,805,849 - 189,828,919 (+)Ensemblpanpan1.1panPan2
CFAP96
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11645,175,351 - 45,208,647 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1645,192,032 - 45,207,964 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1645,659,950 - 45,696,251 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01647,388,187 - 47,424,657 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1647,407,942 - 47,421,691 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11645,356,199 - 45,392,486 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01645,968,604 - 46,005,328 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01646,100,390 - 46,136,694 (-)NCBIUU_Cfam_GSD_1.0
CFAP96
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1546,470,765 - 46,490,006 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11546,470,680 - 46,612,173 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21553,252,277 - 53,271,631 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP96
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17131,375,653 - 131,399,429 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7131,375,619 - 131,399,235 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666037111,637,331 - 111,661,131 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap96
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476916,283,614 - 16,307,579 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476916,281,200 - 16,314,879 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000026757   ⟹   ENSSTOP00000022732
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365543,908,413 - 3,925,942 (-)Ensembl
RefSeq Acc Id: XM_005329211   ⟹   XP_005329268
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494334,184,084 - 34,200,991 (+)NCBI
SpeTri2.0NW_0049365543,908,570 - 3,925,957 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040294498   ⟹   XP_040150432
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494334,187,161 - 34,200,991 (+)NCBI
RefSeq Acc Id: XM_040294502   ⟹   XP_040150436
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494334,187,161 - 34,200,991 (+)NCBI
Protein Sequences
Protein RefSeqs XP_005329268 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150432 (Get FASTA)   NCBI Sequence Viewer  
  XP_040150436 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000022732.2
GenBank Protein KAG3294601 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005329268   ⟸   XM_005329211
- Peptide Label: isoform X1
- UniProtKB: I3NED5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040150432   ⟸   XM_040294498
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040150436   ⟸   XM_040294502
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000022732   ⟸   ENSSTOT00000026757


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000028227 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000026757.2 UniProtKB/TrEMBL
InterPro DUF4586 UniProtKB/TrEMBL
NCBI Gene LOC101971718 ENTREZGENE
PANTHER PTHR31144 UniProtKB/TrEMBL
  UPF0602 PROTEIN C4ORF47 UniProtKB/TrEMBL
Pfam DUF4586 UniProtKB/TrEMBL
UniProt I3NED5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-09 Cfap96  cilia and flagella associated protein 96  CUNH4orf47  chromosome unknown C4orf47 homolog  Symbol and/or name change 5135510 APPROVED
2017-07-13 CUNH4orf47  chromosome unknown C4orf47 homolog  LOC101971718  chromosome unknown open reading frame, human C4orf47  Symbol and/or name change 5135510 APPROVED