Chsy1 (chondroitin sulfate synthase 1) - Rat Genome Database

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Gene: Chsy1 (chondroitin sulfate synthase 1) Ictidomys tridecemlineatus
Analyze
Symbol: Chsy1
Name: chondroitin sulfate synthase 1
RGD ID: 12587362
Description: ENCODES a protein that exhibits acetylgalactosaminyltransferase activity (inferred); glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity (inferred); glycosyltransferase activity (inferred); INVOLVED IN bone morphogenesis (ortholog); cartilage development (ortholog); chondrocyte development (ortholog); ASSOCIATED WITH chromosome 15q26-qter deletion syndrome (ortholog); Experimental Liver Cirrhosis (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640143,648,412 - 143,720,663 (-)NCBI
SpeTri2.0NW_0049364832,613,820 - 2,685,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Chsy1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640143,648,412 - 143,720,663 (-)NCBI
SpeTri2.0NW_0049364832,613,820 - 2,685,986 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHSY1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3815101,175,727 - 101,252,048 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl15101,175,727 - 101,252,048 (-)EnsemblGRCh38hg38GRCh38
GRCh3715101,715,932 - 101,792,253 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361599,533,455 - 99,609,649 (-)NCBINCBI36hg18NCBI36
Build 341599,533,455 - 99,609,649NCBI
Celera1578,129,035 - 78,204,977 (-)NCBI
Cytogenetic Map15q26.3NCBI
HuRef1577,838,413 - 77,914,374 (-)NCBIHuRef
CHM1_115101,556,975 - 101,633,122 (-)NCBICHM1_1
T2T-CHM13v2.01598,930,755 - 99,007,076 (-)NCBI
Chsy1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39765,759,240 - 65,823,546 (+)NCBIGRCm39mm39
GRCm39 Ensembl765,759,263 - 65,823,546 (+)Ensembl
GRCm38766,109,492 - 66,173,798 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl766,109,515 - 66,173,798 (+)EnsemblGRCm38mm10GRCm38
MGSCv37773,254,401 - 73,318,684 (+)NCBIGRCm37mm9NCBIm37
MGSCv36765,988,465 - 66,052,748 (+)NCBImm8
Celera763,545,296 - 63,619,383 (+)NCBICelera
Cytogenetic Map7CNCBI
Chsy1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21119,689,626 - 119,750,711 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1119,686,350 - 119,750,601 (+)Ensembl
Rnor_6.01127,010,587 - 127,071,570 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1127,010,588 - 127,071,570 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01128,095,353 - 128,156,041 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41120,539,002 - 120,600,102 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11120,616,912 - 120,677,080 (+)NCBI
Celera1111,901,152 - 111,961,962 (+)NCBICelera
Cytogenetic Map1q22NCBI
Chsy1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541628,070,710 - 28,135,590 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541628,070,981 - 28,136,848 (-)NCBIChiLan1.0ChiLan1.0
CHSY1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11599,186,705 - 99,259,882 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1599,186,705 - 99,260,591 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01579,901,340 - 79,976,067 (-)NCBIMhudiblu_PPA_v0panPan3
CHSY1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1339,844,227 - 39,916,484 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl339,844,195 - 40,021,573 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha342,532,031 - 42,605,585 (+)NCBI
ROS_Cfam_1.0340,234,309 - 40,307,861 (+)NCBI
ROS_Cfam_1.0 Ensembl340,235,605 - 40,306,490 (+)Ensembl
UMICH_Zoey_3.1339,767,324 - 39,840,760 (+)NCBI
UNSW_CanFamBas_1.0340,004,150 - 40,077,669 (+)NCBI
UU_Cfam_GSD_1.0340,207,051 - 40,279,606 (+)NCBI
CHSY1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1139,730,721 - 139,804,657 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11139,730,703 - 139,804,458 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21155,960,054 - 156,033,821 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHSY1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12919,633,335 - 19,707,547 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2919,632,026 - 19,707,425 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605926,833,395 - 26,907,460 (+)NCBIVero_WHO_p1.0
Chsy1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247683,567,770 - 3,628,360 (+)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005320081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010003700 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005320081   ⟹   XP_005320138
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640143,648,412 - 143,720,663 (-)NCBI
SpeTri2.0NW_0049364832,613,820 - 2,685,986 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005320138 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3262675 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005320138   ⟸   XM_005320081
- UniProtKB: I3MCS8 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009033 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008086 ENTREZGENE
  ENSSTOP00000008086.3 UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009024.3 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.10 UniProtKB/TrEMBL
InterPro Chond_GalNAc UniProtKB/TrEMBL
  Nucleotide-diphossugar_trans UniProtKB/TrEMBL
NCBI Gene Chsy1 ENTREZGENE
Pfam CHGN UniProtKB/TrEMBL
Superfamily-SCOP SSF53448 UniProtKB/TrEMBL
UniProt I3MCS8 ENTREZGENE, UniProtKB/TrEMBL