Znf394 (zinc finger protein 394) - Rat Genome Database

Name: Znf394
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Znf394 (zinc finger protein 394) Ictidomys tridecemlineatus

Analyze

Symbol:

Znf394

Name:

zinc finger protein 394

RGD ID:

12587248

Description:

ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); metal ion binding (inferred); INVOLVED IN regulation of DNA-templated transcription (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH genetic disease (ortholog); pleomorphic xanthoastrocytoma (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	138,143,474 - 138,170,983 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	1,773,032 - 1,805,384 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	1,774,426 - 1,801,918 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of DNA-templated transcription (IEA)

regulation of transcription by RNA polymerase II (IEA)

Cellular Component

nucleus (IEA)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity, RNA polymerase II-specific (IEA)

metal ion binding (IEA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Znf394
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	138,143,474 - 138,170,983 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	1,773,032 - 1,805,384 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	1,774,426 - 1,801,918 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZNF394
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	99,486,519 - 99,500,281 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	99,473,877 - 99,504,857 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	99,084,142 - 99,097,904 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	98,928,790 - 98,935,813 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	98,735,505 - 98,742,528	NCBI
Celera	7	93,825,054 - 93,832,084 (-)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	93,727,374 - 93,734,404 (-)	NCBI		HuRef
CHM1_1	7	99,020,969 - 99,027,992 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	100,725,427 - 100,739,185 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	98,450,626 - 98,457,649 (-)	NCBI

Zkscan14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	145,131,756 - 145,140,972 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	145,131,756 - 145,138,678 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	145,194,946 - 145,204,164 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	145,194,946 - 145,201,868 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	145,955,815 - 145,962,751 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	145,423,494 - 145,455,365 (-)	NCBI		MGSCv36	mm8
Celera	5	142,187,182 - 142,193,947 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	85.12	NCBI

Zfp394
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	14,522,820 - 14,530,998 (+)	NCBI		GRCr8
mRatBN7.2	12	9,409,047 - 9,417,228 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	9,409,078 - 9,417,246 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	12	10,214,379 - 10,222,461 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,837,583 - 10,845,665 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,861,008 - 9,869,090 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	11,179,323 - 11,187,362 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	11,179,329 - 11,187,380 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	12	13,248,537 - 13,256,464 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	12	9,722,094 - 9,730,813 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	12	9,752,021 - 9,760,741 (+)	NCBI
Celera	12	11,214,155 - 11,222,360 (+)	NCBI		Celera
Cytogenetic Map	12	p11	NCBI

Znf394
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	15,159,620 - 15,168,188 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955460	15,159,737 - 15,167,439 (-)	NCBI	ChiLan1.0	ChiLan1.0

ZNF394
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	117,337,324 - 117,357,361 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	165,608,527 - 165,622,010 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	91,459,355 - 91,473,164 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	104,967,815 - 104,975,458 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	104,967,815 - 104,975,632 (-)	Ensembl	panpan1.1		panPan2

ZNF394
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	10,031,530 - 10,047,082 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	10,038,220 - 10,047,077 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	11,657,410 - 11,672,960 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	10,031,519 - 10,047,140 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	10,038,051 - 10,047,143 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	9,894,788 - 9,910,711 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	9,879,777 - 9,895,252 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	10,114,099 - 10,129,661 (+)	NCBI		UU_Cfam_GSD_1.0

ZNF394
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	13,666,361 - 13,672,947 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	13,666,829 - 13,672,897 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666070	2,625,716 - 2,638,549 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Znf394
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	32,917,662 - 32,933,044 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	32,885,784 - 32,933,978 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021719727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021719728	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000039735 ⟹ ENSSTOP00000026484

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936750	1,789,732 - 1,805,384 (-)	Ensembl

RefSeq Acc Id:

ENSSTOT00000040939 ⟹ ENSSTOP00000030044

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936750	1,773,032 - 1,805,384 (-)	Ensembl

RefSeq Acc Id:

XM_021719727 ⟹ XP_021575402

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	138,143,474 - 138,170,983 (+)	NCBI
SpeTri2.0	NW_004936750	1,774,426 - 1,801,918 (-)	NCBI

Sequence:

show sequence

TGCGTAGGCTGGGTTTTGTTTTTTTTTCTATCAAAGGACCTAGAGGATGCCGGGGTATCCCCGG
TGCTAGGCCAGTGCCTAGTGGGCGGCGGGCTGCGTGGAGTCGGGTGTGTGGGACACGACCGCCG
TAAGCCCTCGCTTTGAGGAGGGCCCATGAATTCCTTGGGTTTGCTGTCTTCTCATCTGAAGGCA
AGACTCTGGGAAAGTCAGCAAGTGCCGGAAGAAGATGGGTTGGAGCTTGTCTGCCCAAAGGCGC
GGACGGCCGCGAGATCCAGGGTCGTCGCGCAGCCCCTACCTGAGGGGCTTTTCATAGTGAAGGT
GGAGGAGGACTCACTCGGAGGTCAGGAGTCCTACCCGCCCGGGGCCTGGCAGGACTCTGAAACT
TCTCGACAGCAGTTTAGGCAGTTGCGTTACCAGGAGGTTGATGGACCCGAAGAGGCGCTGAGTC
GGCTCAGGGAACTCTGTCGTCGGTGGCTTAGGCCTGAGATGCGCTCAAAGGAGCAGATCCTGGA
ACTGCTGGTGCTGGAGCAGTTCCTGACCATCCTACCCGACGAACTCCAGGCCTGGGTGCGTGAT
CACTGCCCAGAGAGTGGGGAAGAGGCTGCGGCTGTGGCGCGGGCTCTCCAGAGAGCGCTGGGCG
GGACCTCACCCCCGGGATTGGTGACACTCAAGGATGTGGCCGTGTCTCTACCCTGGGAGGAGTG
GGAGCAGCTGGACCCAGCTCAGAGGGACTTCTGCAGGGAGAATGTGCAGAAGGATAATGGGAGC
ACAGTCCTGCCTAGTTTGGAAACTAAAGCTGAGAACAAAGGGTTGATTCCAAAAGAAGAAATTT
TAGAAGAAGCAGAGCCACAGGTGTGGCTACAAGAAGTTTCCCAGGGGAAGGCCTCCCTCTTCTC
TAAGTGTTACAATATGTGTAAGGAAAGAGTAGAAAAGCACCCAAGAGACCCTGTGTCATTGAAA
CTCAAAAATTCTGAAGAACAAGGACTCAGATCAAGAACTACCATCTCAGATCTCAACAGCAATG
GTTCCACAGAAGAGGGAGTCTCCAAAAATAATGAATTTGGGAATAGTGCTAAAAGTTCCAGCTT
TGTCCTTGGTCAGCACATCCAGAAATCACTGAGGCCAGTTGATGGTGAGGAACAAGGGAACAAG
TGCAAAGAAAGTTTTGATGAGGTGAAACATCACATAGCGAAACCTCACAATTCTGTTGTCAGTG
AGACCCCGAGATGGCTCCATGAAGAAAGACCTTATAAATGTGATCGCTGCGAGAAGAGGTTCAA
ACAGCGCTCAGACCTCCTGAAACACCAGAGGATTCACACAGGTGAGAAACCCTATGAATGCCAA
GAATGTGAGAAAAGCTTCAGTCAGAGTGCTGCCCTGATTAAACACCAGAGGACACACACAGGCG
AGAAGCCATATATATGCTTGAAGTGCGGGGAACACTTCCGACAGAGCTCGCATCTCAATCGGCA
TCAGAGAACCCATGCTGGAGAGAAGTTCTGTAAATGTGAGGAATGTGGGGAGACCTGCCATGTT
TCTAACCTTTTTAGACATCAGAGACTCCATAAAGGGGAGAGACCATATAAATGTGAAGAGTGTG
AGAAGAGCTTCAAACAGCGCTCGGACCTCTTTAAGCATCAGAGAATCCACACTGGGGAGAAGCC
TTATGGATGTTCTGTCTGTGGGAAAAGCTTCAGTCAGAGTGCAACCCTCATTAAACACCAGAGA
ACTCACACTGGAGAAAAACCTTATAAATGTGTTGAATGTGGGGAAAGCTTTAGACAAAGTACAC
ACCTTGTCCGACACCAAAGGATCCATCAAGGAAAGCTGCTGAAAGCTGGCGCCACAGACCTCAG
AGACCCTGCGCAAACGCCCTGGAGCTTTCCCTGACGGCCGGGGGTCTTCATTCAGCGGCACCCA
TAGCTCTCCTCACACTAGTTTCTCCCAAACCTCCACGCCTCTGACATTCCGCCCCGCCGCCTCC
TCCAGGAAGTCCTCCGCGCGGTGCTCGGGTCCACCTGCTGCGGCCATGAAACCTGGGCTCCGTC
TCTTCGGGTTCCCAGGCCTGACCAGGAGTCCCCTCCCTTGGCGAGCCCCACCAGAGAAAAAGGT
CCCCCGACCCGGCCTCAGGACCGTCCTGGGCACTTTCGTCCACTCACGCGCACGGGCCGCGCTC
CGAGTCCCCACCAGCGTCCACTCCAGGACTGCGGTTTGCAGCTCTCTGGTCCGTACAGGAGCGC
CGCGGCCTTGCGTTTGCCAGAACCAGTCAACAGCAGAAGAAGCCCCAATTCGGTCATGTGACCG
CAAGGCCCCGCCCCACTTCCTCTGTCTATCTCGGGGTCCAGCAGCGGGTTTTCGGCTTCTTTGA
TCGCGCGGGGTGGCTGGGTCCTACGTGTTGCTGGGTATCTTTTTGGTCTGGGGAACCCAGGGAC
GTTTTACGACGGAGCCGAATCCCTAGTTCTTTTTATTTTGGAAACAGAATCTTCCTAAATTACC
GAGGGTGTCGCTAAATTGCTGAGACTGGCTCCAACTTGGGATCCTCCTGCCTCAGCCTTTGGAG
TACCTGGGATTACAAGAATAAAGGGTGCAAACCAC

hide sequence

RefSeq Acc Id:

XM_021719728 ⟹ XP_021575403

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	138,143,474 - 138,170,983 (+)	NCBI
SpeTri2.0	NW_004936750	1,774,426 - 1,801,918 (-)	NCBI

Sequence:

show sequence

TGCGTAGGCTGGGTTTTGTTTTTTTTTCTATCAAAGGACCTAGAGGATGCCGGGGTATCCCCGG
TGCTAGGCCAGTGCCTAGTGGGCGGCGGGCTGCGTGGAGTCGGGTGTGTGGGACACGACCGCCG
TAAGCCCTCGCTTTGAGGAGGGCCCATGAATTCCTTGGGTTTGCTGTCTTCTCATCTGAAGGCA
AGACTCTGGGAAAGTCAGCAAGTGCCGGAAGAAGATGGGTTGGAGCTTGTCTGCCCAAAGGCGC
GGACGGCCGCGAGATCCAGGGTCGTCGCGCAGCCCCTACCTGAGGGGCTTTTCATAGTGAAGGT
GGAGGAGGACTCACTCGGAGGTCAGGAGTCCTACCCGCCCGGGGCCTGGCAGGACTCTGAAACT
TCTCGACAGCAGTTTAGGCAGTTGCGTTACCAGGAGGTTGATGGACCCGAAGAGGCGCTGAGTC
GGCTCAGGGAACTCTGTCGTCGGTGGCTTAGGCCTGAGATGCGCTCAAAGGAGCAGATCCTGGA
ACTGCTGGTGCTGGAGCAGTTCCTGACCATCCTACCCGACGAACTCCAGGCCTGGGGATTGGTG
ACACTCAAGGATGTGGCCGTGTCTCTACCCTGGGAGGAGTGGGAGCAGCTGGACCCAGCTCAGA
GGGACTTCTGCAGGGAGAATGTGCAGAAGGATAATGGGAGCACAGTCCTGCCTAGTTTGGAAAC
TAAAGCTGAGAACAAAGGGTTGATTCCAAAAGAAGAAATTTTAGAAGAAGCAGAGCCACAGGTG
TGGCTACAAGAAGTTTCCCAGGGGAAGGCCTCCCTCTTCTCTAAGTGTTACAATATGTGTAAGG
AAAGAGTAGAAAAGCACCCAAGAGACCCTGTGTCATTGAAACTCAAAAATTCTGAAGAACAAGG
ACTCAGATCAAGAACTACCATCTCAGATCTCAACAGCAATGGTTCCACAGAAGAGGGAGTCTCC
AAAAATAATGAATTTGGGAATAGTGCTAAAAGTTCCAGCTTTGTCCTTGGTCAGCACATCCAGA
AATCACTGAGGCCAGTTGATGGTGAGGAACAAGGGAACAAGTGCAAAGAAAGTTTTGATGAGGT
GAAACATCACATAGCGAAACCTCACAATTCTGTTGTCAGTGAGACCCCGAGATGGCTCCATGAA
GAAAGACCTTATAAATGTGATCGCTGCGAGAAGAGGTTCAAACAGCGCTCAGACCTCCTGAAAC
ACCAGAGGATTCACACAGGTGAGAAACCCTATGAATGCCAAGAATGTGAGAAAAGCTTCAGTCA
GAGTGCTGCCCTGATTAAACACCAGAGGACACACACAGGCGAGAAGCCATATATATGCTTGAAG
TGCGGGGAACACTTCCGACAGAGCTCGCATCTCAATCGGCATCAGAGAACCCATGCTGGAGAGA
AGTTCTGTAAATGTGAGGAATGTGGGGAGACCTGCCATGTTTCTAACCTTTTTAGACATCAGAG
ACTCCATAAAGGGGAGAGACCATATAAATGTGAAGAGTGTGAGAAGAGCTTCAAACAGCGCTCG
GACCTCTTTAAGCATCAGAGAATCCACACTGGGGAGAAGCCTTATGGATGTTCTGTCTGTGGGA
AAAGCTTCAGTCAGAGTGCAACCCTCATTAAACACCAGAGAACTCACACTGGAGAAAAACCTTA
TAAATGTGTTGAATGTGGGGAAAGCTTTAGACAAAGTACACACCTTGTCCGACACCAAAGGATC
CATCAAGGAAAGCTGCTGAAAGCTGGCGCCACAGACCTCAGAGACCCTGCGCAAACGCCCTGGA
GCTTTCCCTGACGGCCGGGGGTCTTCATTCAGCGGCACCCATAGCTCTCCTCACACTAGTTTCT
CCCAAACCTCCACGCCTCTGACATTCCGCCCCGCCGCCTCCTCCAGGAAGTCCTCCGCGCGGTG
CTCGGGTCCACCTGCTGCGGCCATGAAACCTGGGCTCCGTCTCTTCGGGTTCCCAGGCCTGACC
AGGAGTCCCCTCCCTTGGCGAGCCCCACCAGAGAAAAAGGTCCCCCGACCCGGCCTCAGGACCG
TCCTGGGCACTTTCGTCCACTCACGCGCACGGGCCGCGCTCCGAGTCCCCACCAGCGTCCACTC
CAGGACTGCGGTTTGCAGCTCTCTGGTCCGTACAGGAGCGCCGCGGCCTTGCGTTTGCCAGAAC
CAGTCAACAGCAGAAGAAGCCCCAATTCGGTCATGTGACCGCAAGGCCCCGCCCCACTTCCTCT
GTCTATCTCGGGGTCCAGCAGCGGGTTTTCGGCTTCTTTGATCGCGCGGGGTGGCTGGGTCCTA
CGTGTTGCTGGGTATCTTTTTGGTCTGGGGAACCCAGGGACGTTTTACGACGGAGCCGAATCCC
TAGTTCTTTTTATTTTGGAAACAGAATCTTCCTAAATTACCGAGGGTGTCGCTAAATTGCTGAG
ACTGGCTCCAACTTGGGATCCTCCTGCCTCAGCCTTTGGAGTACCTGGGATTACAAGAATAAAG
GGTGCAAACCAC

hide sequence

Protein Sequences


Protein RefSeqs	XP_021575402	(Get FASTA)	NCBI Sequence Viewer
	XP_021575403	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000026484.1
	ENSSTOP00000030044.1

RefSeq Acc Id:

XP_021575403 ⟸ XM_021719728

- Peptide Label:

isoform X2

- Sequence:

show sequence

MNSLGLLSSHLKARLWESQQVPEEDGLELVCPKARTAARSRVVAQPLPEGLFIVKVEEDSLGGQ
ESYPPGAWQDSETSRQQFRQLRYQEVDGPEEALSRLRELCRRWLRPEMRSKEQILELLVLEQFL
TILPDELQAWGLVTLKDVAVSLPWEEWEQLDPAQRDFCRENVQKDNGSTVLPSLETKAENKGLI
PKEEILEEAEPQVWLQEVSQGKASLFSKCYNMCKERVEKHPRDPVSLKLKNSEEQGLRSRTTIS
DLNSNGSTEEGVSKNNEFGNSAKSSSFVLGQHIQKSLRPVDGEEQGNKCKESFDEVKHHIAKPH
NSVVSETPRWLHEERPYKCDRCEKRFKQRSDLLKHQRIHTGEKPYECQECEKSFSQSAALIKHQ
RTHTGEKPYICLKCGEHFRQSSHLNRHQRTHAGEKFCKCEECGETCHVSNLFRHQRLHKGERPY
KCEECEKSFKQRSDLFKHQRIHTGEKPYGCSVCGKSFSQSATLIKHQRTHTGEKPYKCVECGES
FRQSTHLVRHQRIHQGKLLKAGATDLRDPAQTPWSFP

hide sequence

RefSeq Acc Id:	XP_021575402 ⟸ XM_021719727
- Peptide Label:	isoform X1
- UniProtKB:	A0A287D930 (UniProtKB/TrEMBL), A0A287CZ03 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNSLGLLSSHLKARLWESQQVPEEDGLELVCPKARTAARSRVVAQPLPEGLFIVKVEEDSLGGQ ESYPPGAWQDSETSRQQFRQLRYQEVDGPEEALSRLRELCRRWLRPEMRSKEQILELLVLEQFL TILPDELQAWVRDHCPESGEEAAAVARALQRALGGTSPPGLVTLKDVAVSLPWEEWEQLDPAQR DFCRENVQKDNGSTVLPSLETKAENKGLIPKEEILEEAEPQVWLQEVSQGKASLFSKCYNMCKE RVEKHPRDPVSLKLKNSEEQGLRSRTTISDLNSNGSTEEGVSKNNEFGNSAKSSSFVLGQHIQK SLRPVDGEEQGNKCKESFDEVKHHIAKPHNSVVSETPRWLHEERPYKCDRCEKRFKQRSDLLKH QRIHTGEKPYECQECEKSFSQSAALIKHQRTHTGEKPYICLKCGEHFRQSSHLNRHQRTHAGEK FCKCEECGETCHVSNLFRHQRLHKGERPYKCEECEKSFKQRSDLFKHQRIHTGEKPYGCSVCGK SFSQSATLIKHQRTHTGEKPYKCVECGESFRQSTHLVRHQRIHQGKLLKAGATDLRDPAQTPWS FP hide sequence

RefSeq Acc Id:

ENSSTOP00000030044 ⟸ ENSSTOT00000040939

RefSeq Acc Id:

ENSSTOP00000026484 ⟸ ENSSTOT00000039735

Protein Domains

C2H2-type KRAB SCAN box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000032054	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000039735.1	UniProtKB/TrEMBL
	ENSSTOT00000040939.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
	6.10.140.140	UniProtKB/TrEMBL
	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	KRAB	UniProtKB/TrEMBL
	KRAB_dom_sf	UniProtKB/TrEMBL
	SCAN_dom	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	Znf394	ENTREZGENE
PANTHER	ZINC FINGER AND SCAN DOMAIN-CONTAINING	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN 394	UniProtKB/TrEMBL
Pfam	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
PROSITE	KRAB	UniProtKB/TrEMBL
	SCAN_BOX	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
SMART	KRAB	UniProtKB/TrEMBL
	SCAN	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
	SSF109640	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A287CZ03	ENTREZGENE, UniProtKB/TrEMBL
	A0A287D930	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar