Syt5 (synaptotagmin 5) - Rat Genome Database

Name: Syt5
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Syt5 (synaptotagmin 5) Ictidomys tridecemlineatus

Analyze

Symbol:

Syt5

Name:

synaptotagmin 5

RGD ID:

12587003

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent phospholipid binding (inferred); clathrin binding (inferred); INVOLVED IN calcium ion-regulated exocytosis of neurotransmitter (inferred); cellular response to calcium ion (inferred); regulation of calcium ion-dependent exocytosis (inferred); ASSOCIATED WITH genetic disease (ortholog); hypertrophic cardiomyopathy (ortholog); nemaline myopathy 5A (ortholog); FOUND IN neuronal dense core vesicle membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

synaptotagmin 5, transcript variant X1; synaptotagmin 5, transcript variant X2; synaptotagmin-5

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SYT5 (synaptotagmin 5)	NCBI	Ortholog
Mus musculus (house mouse):	Syt5 (synaptotagmin V)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Syt5 (synaptotagmin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Syt5 (synaptotagmin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SYT5 (synaptotagmin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SYT5 (synaptotagmin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SYT5 (synaptotagmin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LOC103235294 (synaptotagmin-5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Syt5 (synaptotagmin 5)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	2,102,191 - 2,108,616 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936886	449,194 - 457,088 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936886	451,400 - 457,093 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hypertrophic cardiomyopathy (ISO)

nemaline myopathy 5A (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium ion-regulated exocytosis of neurotransmitter (IEA)

cellular response to calcium ion (IEA)

regulation of calcium ion-dependent exocytosis (IEA)

regulation of dopamine secretion (IEA)

synaptic vesicle endocytosis (IEA)

Cellular Component

axon (IEA)

dense core granule (IEA)

membrane (IEA)

neuron projection (IEA)

neuronal cell body (IEA)

neuronal dense core vesicle membrane (IEA,ISO)

perinuclear region of cytoplasm (IEA)

plasma membrane (IEA)

proximal neuron projection (IEA)

synaptic vesicle membrane (IEA)

Molecular Function

calcium ion binding (IEA)

calcium-dependent phospholipid binding (IEA)

clathrin binding (IEA)

phosphatidylinositol-4,5-bisphosphate binding (IEA)

phosphatidylserine binding (IEA)

protein heterodimerization activity (IEA)

SNARE binding (IEA)

syntaxin binding (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Syt5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	2,102,191 - 2,108,616 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936886	449,194 - 457,088 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936886	451,400 - 457,093 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYT5
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	55,171,196 - 55,180,289 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	55,171,196 - 55,180,289 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	55,682,564 - 55,691,657 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	60,376,281 - 60,383,532 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	60,376,280 - 60,382,727	NCBI
Celera	19	52,725,663 - 52,732,913 (-)	NCBI		Celera
Cytogenetic Map	19	q13.42	NCBI
HuRef	19	52,007,463 - 52,014,713 (-)	NCBI		HuRef
CHM1_1	19	55,678,042 - 55,685,293 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	19	58,265,259 - 58,274,351 (-)	NCBI		T2T-CHM13v2.0

Syt5
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	4,542,764 - 4,550,540 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	4,542,764 - 4,550,540 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	4,539,765 - 4,547,541 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	4,539,765 - 4,547,541 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	4,491,367 - 4,498,169 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	4,142,852 - 4,149,654 (-)	NCBI		MGSCv36	mm8
Celera	7	4,285,056 - 4,291,862 (-)	NCBI		Celera
Cytogenetic Map	7	A1	NCBI
cM Map	7	2.62	NCBI

Syt5
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	78,320,034 - 78,327,750 (+)	NCBI		GRCr8
mRatBN7.2	1	69,277,351 - 69,285,071 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	69,277,351 - 69,285,067 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	74,636,273 - 74,643,984 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	83,200,582 - 83,208,291 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	76,350,203 - 76,357,904 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	72,859,806 - 72,867,934 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	72,860,218 - 72,867,930 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	75,683,287 - 75,691,003 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	68,005,337 - 68,013,052 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	68,083,447 - 68,091,163 (+)	NCBI
Celera	1	67,844,074 - 67,850,141 (-)	NCBI		Celera
Cytogenetic Map	1	q12	NCBI

Syt5
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955567	1,018,433 - 1,024,477 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955567	1,018,433 - 1,024,477 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYT5
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	61,309,394 - 61,316,614 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	63,038,519 - 63,045,936 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	52,214,261 - 52,221,678 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	60,909,026 - 60,916,436 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	60,909,026 - 60,916,436 (-)	Ensembl	panpan1.1		panPan2

SYT5
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	102,456,767 - 102,463,750 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	102,456,782 - 102,463,749 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	102,513,991 - 102,520,804 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	103,110,511 - 103,117,325 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	103,109,988 - 103,117,323 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	102,747,442 - 102,754,253 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	102,459,003 - 102,465,825 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	103,223,057 - 103,229,871 (+)	NCBI		UU_Cfam_GSD_1.0

SYT5
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	59,381,642 - 59,389,298 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	59,381,649 - 59,389,014 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	54,276,396 - 54,283,759 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103235294
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	47,768,567 - 47,776,010 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	47,768,545 - 47,774,732 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666807	9,678 - 17,212 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syt5
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	2,071,770 - 2,078,376 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	2,071,782 - 2,080,680 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005341570	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021720989	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040279923	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004409	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSTOT00000019467 ⟹ ENSSTOP00000015019

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936886	449,194 - 457,088 (-)	Ensembl

RefSeq Acc Id:

XM_005341570 ⟹ XP_005341627

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	2,102,209 - 2,108,616 (+)	NCBI
SpeTri2.0	NW_004936886	451,400 - 457,093 (-)	NCBI

Sequence:

show sequence

GGGTCCTGGACCAGATCTTTTGGTTGTGCCAGGTGTTTTGTGTGTGTATTGTGGAGTCGGGGAT
CAGTGTGGATGTCAAACGGCTGGACCAGAAGATAGAAACTTGTAGGGCTCCGGGATCCACATCA
GTGGGCGCCATCGTGGTTCCCGGGTGGGGCGGGCCAAGGGGCGGGTCGTTCTCTCTTACCGGCC
TGACCACGCGCTGCTTCCTCTCTCTCCCTTTCTGTCCCTCCTTCTCTCTCTGTCTCTGTCTCTC
ACACGCAGACACAGACGCACACACACACACATGTAGACACACACATACGCGCGCACGCGCGGGC
ACGGCGGGGCTCCGCTCAACCGCGCCCCCGCCCTGCCCAGCCCCGCGATCAGCACCCGGGACAG
CGCCGGCCGCCCACAAGCTGGGCGGGGTCCTGACCCGCCTGCGTCTCAGTGTCTGCAGGAGGGT
CCAGTCCCGCCGCTCGGCAGTGGGGGGCTAGGGCGCTTGGGTGCCTCTGCAGCAAGGACCGCAG
GACCCCGCCGCCATGCTGCTGGAGCCCCCGACCCCGGGGCCTGCAGCTTCCGACGCGCCTCCGG
ATTCCAGCCGCATCCGCCACGGCGCAGTGCCCCCCTGGGCTCTGGCCACCATCGTGCTGGTCTC
AGGCCTCCTTGTCTTCAGCTGCTGTTTCTGTTTCTACCGGAAGCGCTGTCGCAGGCGGCTGGGC
AAGAAGAGTCAGGCCCAAGCCCAGGTCCACCTTCAGGAAGTGAAGGAGCTGGGCCGGAGTTACA
TAGATAAGGTGCAGCCAGAAGTCGAGGAGCTGGAACCCTCACTGTCGGGGCCAGGGCAGCAAGC
AGCAGAGAAGCATGCGCTAGGACGACTGCAGTACTCACTGGATTATGACTTCCAGAGTGGCCAG
CTGCTGGTGGGTATCCTGGAAGCTGAAGGATTGGCTGCCTTGGACCTGGGAGGTTCTTCGGACC
CATATGTGCGGGTCTACCTGCTGCCAGACAAGCGTAGGCGATATGAGACCAAGGTGCATCGGCA
GACGCTGAACCCACACTTTGGGGAGACCTTCGCTTTCAAGGTCCCCTATGTGGAGCTGGGGGGA
AGGGTGCTGGTCATGGCGGTATATGACTTCGACCGCTTCTCCCGAAACGACGCCATTGGGGAGG
CGCGGGTTCCTATGAGCTCTGTGGATCTGGGACGACCTGTGCAGGCCTGGCTGGAACTGCAGGC
GGCCCCGAGGGAGGAGCAGGAGAAACTCGGGGACATCTGCTTCTCTCTCCGTTATGTCCCCACC
GCAGGGAAGCTCACCGTCATTGTCCTGGAGGCTAAAAACTTGAAGAAGATGGATGTGGGCGGAC
TATCAGATCCCTACGTCAAGGTCCACCTGCTGCAGGGCGGCAAAAAGGTGCGGAAGAAGAAAAC
CACCATTAAGAAGAACACTCTCAACCCCTATTACAACGAGGCCTTCAGCTTCGAGGTGCCCTGT
GACCAAGTCCAGAAGGTCCAGGTGGAGCTGACCGTGCTGGACTACGACAAGCTGGGCAAGAACG
AGGCCATCGGGAGGGTGGCTGTGGGCGCGGCCGTGGGCGGGGCTGGCCTGCGGCACTGGGCGGA
CATGCTGGCCAATCCCCGGAGGCCCATAGCGCAGTGGCACTCGCTGCGGCCCCCTGACCGAGTG
AGGCTGCTGCCAGCGCCCTGATCCCCACTCCCAAGTCCCCACCAAACCTCGATTCTGGCACTGA
CCCCAGACTCTCAGCCCTACCTTTGGCCTCGGCCTCTCGCCCTGGCTGCCCCAACCGTCAGGTC
CTTGCGTGCCTCCCACCCCCCCATGCACCACGACAGCTTCCCAACCCCAGCAGCATAACCAGAA
GTCCCAGGAACCCTGGGGAGGGAGAGCAGCCTGGCCGGCCTGCCCCAGGCCCCCACCCTCTGCT
CTGACCATCAGCCTCCATCCGGGATCCCCTTTGCTCCCAGCGCCCTTTCCCCCCACAGCTTGAC
TCCTGCACTGCTCTCCCGGCCGAATAAATACTCAGCAGCTCTGGTG

hide sequence

RefSeq Acc Id:

XM_021720989 ⟹ XP_021576664

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	2,102,191 - 2,108,616 (+)	NCBI
SpeTri2.0	NW_004936886	451,400 - 457,093 (-)	NCBI

Sequence:

show sequence

GGGTCCTGGACCAGATCTTTTGGTTGTGCCAGGTGTTTTGTGTGTGTATTGTGGAGTCGGGGAT
CAGTGTGGATGTCAAACGGCTGGACCAGAAGATAGAAACTTGTAGGGCTCCGGGATCCACATCA
GTGGGCGCCATCGTGGTTCCCGGGTGGGGCGGGCCAAGGGGCGGGTCGTTCTCTCTTACCGGCC
TGACCACGCGCTGCTTCCTCTCTCTCCCTTTCTGTCCCTCCTTCTCTCTCTGTCTCTGTCTCTC
ACACGCAGACACAGACGCACACACACACACATGTAGACACACACATACGCGCGCACGCGCGGGC
ACGGCGGGGCTCCGCTCAACCGCGCCCCCGCCCTGCCCAGCCCCGCGATCAGCACCCGGGACAG
CGCCGGCCGCCCACAAGCTGGGCGGGGTCCTGACCCGCCTGCGTCTCAGTGTCTGCAGGAGGGT
CCAGTCCCGCCGCTCGGCAGTGGGGGGCTAGGGCGCTTGGGTGCCTCTGCAGCAAGGACCGCAG
GACCCCGCCGCCATGCTGCTGGAGCCCCCGACCCCGGGGCCTGCAGCTTCCGACGCGCCTCCGG
ATTCCAGCCGCATCCGCCACGGCGCAGTGCCCCCCTGGGCTCTGGCCACCATCGTGCTGGTCTC
AGGCCTCCTTGTCTTCAGCTGCTGTTTCTGTTTCTACCGGAAGCGCTGTCGCAGGCGGCTGGGC
AAGAAGAGTCAGGCCCAAGCCCAGGTCCACCTTCAGGAAGTGAAGGAGCTGGGCCGGAGTTACA
TAGATAAGGTGCAGCCAGAAGTCGAGGAGCTGGAACCCTCACTGTCGGGGCCAGGGCAGCAAGC
AGCAGAGAAGCATGCGCTAGGACGACTGCAGTACTCACTGGATTATGACTTCCAGAGTGGCCAG
CTGCTGGTGGGTATCCTGGAAGCTGAAGGATTGGCTGCCTTGGACCTGGGAGGTTCTTCGGACC
CATATGTGCGGGTCTACCTGCTGCCAGACAAGCGTAGGCGATATGAGACCAAGGTGCATCGGCA
GACGCTGAACCCACACTTTGGGGAGACCTTCGCTTTCAAGGTCCCCTATGTGGAGCTGGGGGGA
AGGGTGCTGGTCATGGCGGTATATGACTTCGACCGCTTCTCCCGAAACGACGCCATTGGGGAGG
CGCGGGTTCCTATGAGCTCTGTGGATCTGGGACGACCTGTGCAGGCCTGGCTGGAACTGCAGGC
GGCCCCGAGGGAGGAGGAGAAACTCGGGGACATCTGCTTCTCTCTCCGTTATGTCCCCACCGCA
GGGAAGCTCACCGTCATTGTCCTGGAGGCTAAAAACTTGAAGAAGATGGATGTGGGCGGACTAT
CAGATCCCTACGTCAAGGTCCACCTGCTGCAGGGCGGCAAAAAGGTGCGGAAGAAGAAAACCAC
CATTAAGAAGAACACTCTCAACCCCTATTACAACGAGGCCTTCAGCTTCGAGGTGCCCTGTGAC
CAAGTCCAGAAGGTCCAGGTGGAGCTGACCGTGCTGGACTACGACAAGCTGGGCAAGAACGAGG
CCATCGGGAGGGTGGCTGTGGGCGCGGCCGTGGGCGGGGCTGGCCTGCGGCACTGGGCGGACAT
GCTGGCCAATCCCCGGAGGCCCATAGCGCAGTGGCACTCGCTGCGGCCCCCTGACCGAGTGAGG
CTGCTGCCAGCGCCCTGATCCCCACTCCCAAGTCCCCACCAAACCTCGATTCTGGCACTGACCC
CAGACTCTCAGCCCTACCTTTGGCCTCGGCCTCTCGCCCTGGCTGCCCCAACCGTCAGGTCCTT
GCGTGCCTCCCACCCCCCCATGCACCACGACAGCTTCCCAACCCCAGCAGCATAACCAGAAGTC
CCAGGAACCCTGGGGAGGGAGAGCAGCCTGGCCGGCCTGCCCCAGGCCCCCACCCTCTGCTCTG
ACCATCAGCCTCCATCCGGGATCCCCTTTGCTCCCAGCGCCCTTTCCCCCCACAGCTTGACTCC
TGCACTGCTCTCCCGGCCGAATAAATACTCAGCAGCTCTGGTG

hide sequence

RefSeq Acc Id:

XM_040279923 ⟹ XP_040135857

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409349	2,102,741 - 2,108,616 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_005341627	(Get FASTA)	NCBI Sequence Viewer
	XP_021576664	(Get FASTA)	NCBI Sequence Viewer
	XP_040135857	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000015019.1
GenBank Protein	KAG3255633	(Get FASTA)	NCBI Sequence Viewer
	KAG3255634	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005341627 ⟸ XM_005341570
- Peptide Label:	isoform X1
- UniProtKB:	I3MSC4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLLEPPTPGPAASDAPPDSSRIRHGAVPPWALATIVLVSGLLVFSCCFCFYRKRCRRRLGKKSQ AQAQVHLQEVKELGRSYIDKVQPEVEELEPSLSGPGQQAAEKHALGRLQYSLDYDFQSGQLLVG ILEAEGLAALDLGGSSDPYVRVYLLPDKRRRYETKVHRQTLNPHFGETFAFKVPYVELGGRVLV MAVYDFDRFSRNDAIGEARVPMSSVDLGRPVQAWLELQAAPREEQEKLGDICFSLRYVPTAGKL TVIVLEAKNLKKMDVGGLSDPYVKVHLLQGGKKVRKKKTTIKKNTLNPYYNEAFSFEVPCDQVQ KVQVELTVLDYDKLGKNEAIGRVAVGAAVGGAGLRHWADMLANPRRPIAQWHSLRPPDRVRLLP AP hide sequence

RefSeq Acc Id:

XP_021576664 ⟸ XM_021720989

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLLEPPTPGPAASDAPPDSSRIRHGAVPPWALATIVLVSGLLVFSCCFCFYRKRCRRRLGKKSQ
AQAQVHLQEVKELGRSYIDKVQPEVEELEPSLSGPGQQAAEKHALGRLQYSLDYDFQSGQLLVG
ILEAEGLAALDLGGSSDPYVRVYLLPDKRRRYETKVHRQTLNPHFGETFAFKVPYVELGGRVLV
MAVYDFDRFSRNDAIGEARVPMSSVDLGRPVQAWLELQAAPREEEKLGDICFSLRYVPTAGKLT
VIVLEAKNLKKMDVGGLSDPYVKVHLLQGGKKVRKKKTTIKKNTLNPYYNEAFSFEVPCDQVQK
VQVELTVLDYDKLGKNEAIGRVAVGAAVGGAGLRHWADMLANPRRPIAQWHSLRPPDRVRLLPA
P

hide sequence

RefSeq Acc Id:	XP_040135857 ⟸ XM_040279923
- Peptide Label:	isoform X1
- UniProtKB:	I3MSC4 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSSTOP00000015019 ⟸ ENSSTOT00000019467

Protein Domains

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000029144	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000019467.2	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.150	UniProtKB/TrEMBL
InterPro	C2_dom	UniProtKB/TrEMBL
	C2_domain_sf	UniProtKB/TrEMBL
	Synaptotagmin	UniProtKB/TrEMBL
NCBI Gene	Syt5	ENTREZGENE
PANTHER	PTHR10024:SF282	UniProtKB/TrEMBL
	SYNAPTOTAGMIN	UniProtKB/TrEMBL
Pfam	PF00168	UniProtKB/TrEMBL
PRINTS	C2DOMAIN	UniProtKB/TrEMBL
	SYNAPTOTAGMN	UniProtKB/TrEMBL
PROSITE	PS50004	UniProtKB/TrEMBL
SMART	SM00239	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49562	UniProtKB/TrEMBL
UniProt	I3MSC4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar