LOC101969767 (all-trans-retinol dehydrogenase [NAD(+)] ADH4) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC101969767 (all-trans-retinol dehydrogenase [NAD(+)] ADH4) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101969767 (Ensembl: ADH4)
Name: all-trans-retinol dehydrogenase [NAD(+)] ADH4 (Ensembl:alcohol dehydrogenase 4)
RGD ID: 12583728
Description: ENCODES a protein that exhibits alcohol dehydrogenase (NAD+) activity (inferred); alcohol dehydrogenase (NAD+) activity, zinc-dependent (inferred); aldose reductase (NADPH) activity (inferred); INVOLVED IN alcohol catabolic process (inferred); alcohol metabolic process (inferred); cellular aldehyde metabolic process (inferred); FOUND IN cytoplasm (inferred); cytosol (inferred); nucleoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Adh4; alcohol dehydrogenase 4; alcohol dehydrogenase 4 (class II), pi polypeptide
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530120,420,400 - 20,432,883 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365203,760,755 - 3,775,873 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365203,763,849 - 3,777,177 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005325813 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000033700   ⟹   ENSSTOP00000024209
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365203,760,755 - 3,775,873 (+)Ensembl
RefSeq Acc Id: XM_005325813   ⟹   XP_005325870
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440530120,420,400 - 20,432,883 (+)NCBI
SpeTri2.0NW_0049365203,763,849 - 3,777,177 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005325870 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000024209.1
GenBank Protein KAG3275905 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005325870   ⟸   XM_005325813
- UniProtKB: A0A287CSE7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000024209   ⟸   ENSSTOT00000033700
Protein Domains
Alcohol dehydrogenase-like C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000029406 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000033700.1 UniProtKB/TrEMBL
Gene3D-CATH Medium-chain alcohol dehydrogenases, catalytic domain UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro ADH_C UniProtKB/TrEMBL
  GroES-like_sf UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
NCBI Gene LOC101969767 ENTREZGENE
PANTHER ALCOHOL DEHYDROGENASE UniProtKB/TrEMBL
  PTHR43880:SF14 UniProtKB/TrEMBL
Pfam ADH_zinc_N UniProtKB/TrEMBL
Superfamily-SCOP SSF50129 UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
UniProt A0A287CSE7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-26 LOC101969767  all-trans-retinol dehydrogenase [NAD(+)] ADH4  LOC101969767  alcohol dehydrogenase 4  Symbol and/or name change 5135510 APPROVED