Ccno (cyclin O) - Rat Genome Database

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Gene: Ccno (cyclin O) Ictidomys tridecemlineatus
Analyze
Symbol: Ccno
Name: cyclin O
RGD ID: 12583399
Description: ENCODES a protein that exhibits cyclin-dependent protein serine/threonine kinase regulator activity (inferred); INVOLVED IN response to xenobiotic stimulus (ortholog); ASSOCIATED WITH genetic disease (ortholog); Neurodevelopmental Disorders (ortholog); obstructive lung disease (ortholog); FOUND IN centriolar satellite (inferred); cyclin-dependent protein kinase holoenzyme complex (inferred); cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cyclin-O
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,590,284 - 203,592,889 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,527,220 - 12,529,438 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,526,391 - 12,529,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Ccno
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,590,284 - 203,592,889 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,527,220 - 12,529,438 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,526,391 - 12,529,384 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCNO
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,231,152 - 55,233,608 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,231,152 - 55,233,608 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,526,980 - 54,529,436 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,562,737 - 54,565,265 (-)NCBINCBI36Build 36hg18NCBI36
Build 34554,562,739 - 54,564,476NCBI
Celera551,479,778 - 51,482,306 (-)NCBICelera
Cytogenetic Map5q11.2ENTREZGENE
HuRef551,499,999 - 51,502,527 (-)NCBIHuRef
CHM1_1554,530,839 - 54,533,367 (-)NCBICHM1_1
T2T-CHM13v2.0556,058,442 - 56,060,898 (-)NCBIT2T-CHM13v2.0
Ccno
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913113,124,363 - 113,127,313 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13113,124,336 - 113,127,311 (+)EnsemblGRCm39 Ensembl
GRCm3813112,987,802 - 112,990,778 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,987,802 - 112,990,777 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,778,010 - 113,780,986 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613114,108,680 - 114,111,656 (+)NCBIMGSCv36mm8
Celera13117,304,968 - 117,307,976 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
Ccno
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,364,074 - 46,367,113 (+)NCBIGRCr8
mRatBN7.2244,630,873 - 44,633,912 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,626,369 - 44,633,914 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx251,739,043 - 51,742,064 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0249,797,408 - 49,800,431 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0244,672,781 - 44,675,828 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0244,857,043 - 44,860,317 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,857,213 - 44,860,315 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,895,923 - 63,899,197 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,377,953 - 44,381,020 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera240,404,218 - 40,407,279 (+)NCBICelera
Cytogenetic Map2q14NCBI
Ccno
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,432,309 - 12,435,435 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544612,432,889 - 12,435,435 (+)NCBIChiLan1.0ChiLan1.0
CCNO
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2458,706,828 - 58,709,612 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1556,860,458 - 56,863,242 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,796,177 - 58,798,797 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1560,418,844 - 60,421,475 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl560,418,890 - 60,421,475 (+)Ensemblpanpan1.1panPan2
CCNO
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,587,293 - 42,589,865 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,587,516 - 42,589,627 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,633,042 - 39,635,605 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,051,003 - 43,053,568 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,051,009 - 43,053,337 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,129,597 - 40,132,160 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0240,931,367 - 40,933,930 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0241,754,336 - 41,756,899 (-)NCBIUU_Cfam_GSD_1.0
CCNO
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,386,749 - 34,390,547 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,387,179 - 34,390,611 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,432,270 - 36,434,433 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CCNO
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,466,047 - 51,470,013 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,466,270 - 51,468,407 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049334,836 - 337,469 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccno
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247594,032,652 - 4,036,356 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247594,032,431 - 4,036,204 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005319630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSSTOT00000010779   ⟹   ENSSTOP00000009671
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648012,527,220 - 12,529,438 (+)Ensembl
RefSeq Acc Id: XM_005319630   ⟹   XP_005319687
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,590,284 - 203,592,889 (+)NCBI
SpeTri2.0NW_00493648012,526,391 - 12,529,384 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005319687 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000009671.2
GenBank Protein KAG3266682 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005319687   ⟸   XM_005319630
- UniProtKB: I3MG37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000009671   ⟸   ENSSTOT00000010779
Protein Domains
Cyclin C-terminal   Cyclin-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000010783 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000010779.3 UniProtKB/TrEMBL
Gene3D-CATH Cyclin-like UniProtKB/TrEMBL
InterPro Cyclin UniProtKB/TrEMBL
  Cyclin-like UniProtKB/TrEMBL
  Cyclin-like_sf UniProtKB/TrEMBL
  Cyclin_C-dom UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
NCBI Gene Ccno ENTREZGENE
PANTHER PTHR10177 UniProtKB/TrEMBL
  PTHR10177:SF401 UniProtKB/TrEMBL
Pfam Cyclin_C UniProtKB/TrEMBL
  Cyclin_N UniProtKB/TrEMBL
SMART CYCLIN UniProtKB/TrEMBL
  Cyclin_C UniProtKB/TrEMBL
Superfamily-SCOP SSF47954 UniProtKB/TrEMBL
UniProt I3MG37 ENTREZGENE, UniProtKB/TrEMBL