LOC101970597 (sulfotransferase 1C1) - Rat Genome Database

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Gene: LOC101970597 (sulfotransferase 1C1) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101970597 (Ensembl: SULT1C3)
Name: sulfotransferase 1C1
RGD ID: 12582692
Description: ENCODES a protein that exhibits aryl sulfotransferase activity (ortholog); bile-salt sulfotransferase activity (ortholog); INVOLVED IN cholesterol metabolic process (ortholog); sulfur compound metabolic process (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant distal hereditary motor neuronopathy 7 (ortholog); Chemical and Drug Induced Liver Injury (ortholog); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sulfotransferase 1C3; sulfotransferase family 1C member 3; Sult1c3
RGD Orthologs
Human
Mouse
Rat
Dog
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629294,182,312 - 94,201,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367291,783,105 - 1,796,740 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367291,783,124 - 1,796,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC101970597
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629294,182,312 - 94,201,456 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367291,783,105 - 1,796,740 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367291,783,124 - 1,796,723 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SULT1C3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382108,239,968 - 108,265,351 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2108,239,968 - 108,265,351 (+)EnsemblGRCh38hg38GRCh38
GRCh372108,856,424 - 108,881,807 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362108,230,083 - 108,248,239 (+)NCBINCBI36Build 36hg18NCBI36
Celera2103,171,922 - 103,190,078 (+)NCBICelera
Cytogenetic Map2q12.3NCBI
HuRef2102,462,741 - 102,480,898 (+)NCBIHuRef
CHM1_12108,867,927 - 108,886,080 (+)NCBICHM1_1
T2T-CHM13v2.02108,700,880 - 108,726,238 (+)NCBIT2T-CHM13v2.0
Sult1c1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391754,268,643 - 54,297,659 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1754,268,643 - 54,297,702 (-)EnsemblGRCm39 Ensembl
GRCm381753,961,615 - 53,990,631 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1753,961,615 - 53,990,674 (-)EnsemblGRCm38mm10GRCm38
MGSCv371754,100,940 - 54,129,956 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361753,426,544 - 53,455,560 (-)NCBIMGSCv36mm8
Celera1757,389,714 - 57,419,268 (-)NCBICelera
Cytogenetic Map17CNCBI
cM Map1728.07NCBI
Sult1c3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr897,548,839 - 7,594,299 (-)NCBIGRCr8
mRatBN7.297,221,580 - 7,266,991 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl97,221,578 - 7,267,030 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx910,286,850 - 10,332,321 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0914,525,352 - 14,570,817 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0913,276,706 - 13,322,183 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.094,931,038 - 4,978,847 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl94,930,818 - 4,978,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.093,978,166 - 4,025,580 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.49486,576 - 531,962 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.19517,647 - 532,182 (+)NCBI
Celera93,070,014 - 3,115,501 (-)NCBICelera
Cytogenetic Map9q11NCBI
SULT1C3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11035,610,282 - 35,644,315 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1035,610,989 - 35,644,557 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1035,532,772 - 35,566,646 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01036,464,237 - 36,498,469 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1036,464,979 - 36,498,824 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11036,194,203 - 36,228,357 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01036,480,359 - 36,514,550 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01036,668,792 - 36,702,970 (-)NCBIUU_Cfam_GSD_1.0
SULT1C3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl347,838,558 - 47,856,943 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1347,838,671 - 47,864,646 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2350,008,066 - 50,034,138 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SULT1C3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11411,621,851 - 11,638,719 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1411,622,043 - 11,636,652 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041179,426,054 - 179,441,166 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005339089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010001352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000021330   ⟹   ENSSTOP00000018664
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049367291,783,105 - 1,796,740 (+)Ensembl
RefSeq Acc Id: XM_005339089   ⟹   XP_005339146
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440629294,182,312 - 94,201,456 (+)NCBI
SpeTri2.0NW_0049367291,783,124 - 1,796,723 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005339146 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000018664.1
GenBank Protein KAG3268186 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005339146   ⟸   XM_005339089
- UniProtKB: I3N2R8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSTOP00000018664   ⟸   ENSSTOT00000021330
Protein Domains
Sulfotransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000027834 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000021330.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro P-loop_NTPase UniProtKB/TrEMBL
  Sulfotransferase_dom UniProtKB/TrEMBL
NCBI Gene Sult1c3 ENTREZGENE
PANTHER SULFOTRANSFERASE 1C3 UniProtKB/TrEMBL
  SULFOTRANSFERASE SULT UniProtKB/TrEMBL
Pfam Sulfotransfer_1 UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt I3N2R8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-07-13 LOC101970597  sulfotransferase 1C1  Sult1c3  sulfotransferase family 1C member 3  Symbol and/or name change 5135510 APPROVED