Tnrc6c (trinucleotide repeat containing adaptor 6C) - Rat Genome Database

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Gene: Tnrc6c (trinucleotide repeat containing adaptor 6C) Ictidomys tridecemlineatus
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Symbol: Tnrc6c
Name: trinucleotide repeat containing adaptor 6C
RGD ID: 12582021
Description: INVOLVED IN embryonic hemopoiesis (ortholog); embryonic organ development (ortholog); endoderm development (ortholog); PARTICIPATES IN microRNA pathway; ASSOCIATED WITH COVID-19 (ortholog); intellectual disability (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: LOC110598856; trinucleotide repeat containing 6C; uncharacterized LOC110598856
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,670,705 - 3,761,602 (-)NCBI
SpeTri2.0NW_0049365942,656,079 - 2,741,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Tnrc6c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056023,670,705 - 3,761,602 (-)NCBI
SpeTri2.0NW_0049365942,656,079 - 2,741,254 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNRC6C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1777,959,240 - 78,108,835 (+)EnsemblGRCh38hg38GRCh38
GRCh381777,958,853 - 78,108,835 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371776,000,318 - 76,104,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361773,556,589 - 73,612,616 (+)NCBINCBI36hg18NCBI36
Build 341773,556,588 - 73,612,616NCBI
Celera1772,596,318 - 72,700,896 (+)NCBI
Cytogenetic Map17q25.3NCBI
HuRef1771,424,371 - 71,528,917 (+)NCBIHuRef
CHM1_11776,065,011 - 76,169,559 (+)NCBICHM1_1
Tnrc6c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911117,544,529 - 117,654,265 (+)NCBIGRCm39mm39
GRCm39 Ensembl11117,545,115 - 117,654,265 (+)Ensembl
GRCm3811117,653,703 - 117,763,439 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11117,654,289 - 117,763,439 (+)EnsemblGRCm38mm10GRCm38
MGSCv3711117,515,603 - 117,624,753 (+)NCBIGRCm37mm9NCBIm37
MGSCv3611117,470,379 - 117,579,529 (+)NCBImm8
Celera11129,397,726 - 129,507,237 (+)NCBICelera
Cytogenetic Map11E2NCBI
Tnrc6c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.210102,908,958 - 102,979,543 (+)NCBI
Rnor_6.0 Ensembl10106,712,127 - 106,762,043 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.010106,698,359 - 106,763,639 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.010106,337,197 - 106,403,097 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410107,829,754 - 107,854,869 (+)NCBIRGSC3.4rn4RGSC3.4
Celera10101,489,423 - 101,539,688 (+)NCBICelera
Cytogenetic Map10q32.2NCBI
Tnrc6c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555064,440,555 - 4,559,070 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555064,440,555 - 4,579,642 (-)NCBIChiLan1.0ChiLan1.0
TNRC6C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11777,634,111 - 77,738,511 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1777,633,564 - 77,738,511 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01772,035,737 - 72,185,489 (+)NCBIMhudiblu_PPA_v0panPan3
TNRC6C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.193,018,599 - 3,122,664 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl93,020,533 - 3,171,471 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha93,701,674 - 3,805,806 (-)NCBI
ROS_Cfam_1.093,696,277 - 3,800,626 (-)NCBI
UMICH_Zoey_3.193,721,379 - 3,823,452 (-)NCBI
UNSW_CanFamBas_1.093,843,625 - 3,947,774 (-)NCBI
UU_Cfam_GSD_1.093,925,070 - 4,029,400 (-)NCBI
TNRC6C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl123,846,428 - 3,935,391 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1123,847,522 - 3,939,054 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
TNRC6C
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11643,610,595 - 43,718,117 (-)NCBI
ChlSab1.1 Ensembl1643,613,223 - 43,717,852 (-)Ensembl
Tnrc6c
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248017,552,644 - 7,644,755 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005332611   ⟹   XP_005332668
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365942,656,102 - 2,741,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013361672   ⟹   XP_013217126
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,673,238 - 3,755,911 (-)NCBI
SpeTri2.0NW_0049365942,694,445 - 2,741,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013361673   ⟹   XP_013217127
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,673,287 - 3,755,912 (-)NCBI
SpeTri2.0NW_0049365942,694,557 - 2,741,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731255   ⟹   XP_021586930
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,670,705 - 3,755,885 (-)NCBI
SpeTri2.0NW_0049365942,656,102 - 2,741,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731256   ⟹   XP_021586931
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049365942,656,079 - 2,741,254 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040268397   ⟹   XP_040124331
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,670,705 - 3,761,602 (-)NCBI
RefSeq Acc Id: XM_040268398   ⟹   XP_040124332
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,673,287 - 3,755,911 (-)NCBI
RefSeq Acc Id: XM_040268399   ⟹   XP_040124333
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_0244056023,670,705 - 3,755,912 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_005332668   ⟸   XM_005332611
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_013217127   ⟸   XM_013361673
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_013217126   ⟸   XM_013361672
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021586931   ⟸   XM_021731256
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021586930   ⟸   XM_021731255
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_040124331   ⟸   XM_040268397
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040124333   ⟸   XM_040268399
- Peptide Label: isoform X5
RefSeq Acc Id: XP_040124332   ⟸   XM_040268398
- Peptide Label: isoform X3
Protein Domains
RRM   UBA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000009101 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000008168 UniProtKB/TrEMBL
  ENSSTOP00000026986 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000009111 UniProtKB/TrEMBL
  ENSSTOT00000033716 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/TrEMBL
InterPro Argonaute_hook_dom UniProtKB/TrEMBL
  GW182_M_dom UniProtKB/TrEMBL
  Nucleotide-bd_a/b_plait_sf UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/TrEMBL
  RRM_dom UniProtKB/TrEMBL
  TNR6C_UBA UniProtKB/TrEMBL
  TNRC6_PABC-bd UniProtKB/TrEMBL
  TNRC6C UniProtKB/TrEMBL
  TNRC6C_RRM UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
  UBA-like_sf UniProtKB/TrEMBL
NCBI Gene Tnrc6c ENTREZGENE
PANTHER PTHR13020:SF9 UniProtKB/TrEMBL
Pfam Ago_hook UniProtKB/TrEMBL
  M_domain UniProtKB/TrEMBL
  TNRC6-PABC_bdg UniProtKB/TrEMBL
PROSITE RRM UniProtKB/TrEMBL
  UBA UniProtKB/TrEMBL
SMART UBA UniProtKB/TrEMBL
Superfamily-SCOP SSF46934 UniProtKB/TrEMBL
  SSF54928 UniProtKB/TrEMBL
UniProt A0A287D070_ICTTR UniProtKB/TrEMBL
  I3MCY5_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-25 Tnrc6c  trinucleotide repeat containing adaptor 6C  LOC110598856  uncharacterized LOC110598856  Data Merged 737654 PROVISIONAL
2019-01-15 Tnrc6c  trinucleotide repeat containing adaptor 6C    trinucleotide repeat containing 6C  Symbol and/or name change 5135510 APPROVED