Nsd1 (nuclear receptor binding SET domain protein 1) - Rat Genome Database

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Gene: Nsd1 (nuclear receptor binding SET domain protein 1) Ictidomys tridecemlineatus
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Symbol: Nsd1
Name: nuclear receptor binding SET domain protein 1
RGD ID: 12581591
Description: ENCODES a protein that exhibits chromatin binding (ortholog); histone H4K20 methyltransferase activity (ortholog); nuclear estrogen receptor binding (ortholog); INVOLVED IN gastrulation with mouth forming second (ortholog); negative regulation of transcription by RNA polymerase II (ortholog); regulation of peptidyl-serine phosphorylation (ortholog); PARTICIPATES IN histone modification pathway; ASSOCIATED WITH acute myeloid leukemia (ortholog); adenoid cystic carcinoma (ortholog); autistic disorder (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone-lysine N-methyltransferase, H3 lysine-36 and H4 lysine-20 specific; histone-lysine N-methyltransferase, H3 lysine-36 specific; nuclear receptor binding SET domain protein 1, transcript variant X1; nuclear receptor binding SET domain protein 1, transcript variant X2; nuclear receptor binding SET domain protein 1, transcript variant X3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,401,170 - 122,552,286 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,425,974 - 1,572,715 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,426,318 - 1,577,193 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Nsd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,401,170 - 122,552,286 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,425,974 - 1,572,715 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,426,318 - 1,577,193 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NSD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385177,131,798 - 177,300,213 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5177,131,830 - 177,300,213 (+)EnsemblGRCh38hg38GRCh38
GRCh375176,560,016 - 176,727,214 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,493,532 - 176,655,369 (+)NCBINCBI36Build 36hg18NCBI36
Build 345176,494,690 - 176,655,367NCBI
Celera5171,774,148 - 171,941,231 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5171,481,615 - 171,647,948 (+)NCBIHuRef
CHM1_15175,992,834 - 176,160,257 (+)NCBICHM1_1
T2T-CHM13v2.05177,675,008 - 177,843,448 (+)NCBIT2T-CHM13v2.0
Nsd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,357,595 - 55,466,138 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,357,595 - 55,466,138 (+)EnsemblGRCm39 Ensembl
GRCm381355,209,782 - 55,318,325 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,209,782 - 55,318,325 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,311,143 - 55,419,686 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,243,517 - 55,324,503 (+)NCBIMGSCv36mm8
Celera1356,265,599 - 56,373,905 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1329.8NCBI
Nsd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,317,085 - 9,431,528 (-)NCBIGRCr8
mRatBN7.2179,311,963 - 9,426,373 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,315,237 - 9,425,358 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,328,369 - 9,440,603 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,857,509 - 10,970,288 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,324,761 - 9,437,004 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,840,859 - 9,955,391 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,844,133 - 9,952,898 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,950,539 - 12,065,042 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,362,482 - 15,471,961 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11715,363,376 - 15,471,151 (-)NCBI
Celera179,393,607 - 9,502,492 (-)NCBICelera
Cytogenetic Map17p14NCBI
Nsd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,413,595 - 29,542,768 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,416,393 - 29,547,444 (+)NCBIChiLan1.0ChiLan1.0
NSD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24172,214,174 - 172,384,745 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,353,696 - 170,524,284 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,431,968 - 172,602,174 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,499,866 - 179,666,351 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,499,865 - 179,666,351 (+)Ensemblpanpan1.1panPan2
NSD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1436,058,351 - 36,214,254 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl436,063,134 - 36,210,999 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha436,025,606 - 36,179,354 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0436,424,511 - 36,576,907 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl436,429,281 - 36,578,335 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,249,611 - 36,403,905 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0436,435,795 - 36,591,251 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0436,945,351 - 37,099,849 (-)NCBIUU_Cfam_GSD_1.0
NSD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,654,379 - 80,809,059 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,649,882 - 80,810,934 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2282,120,312 - 82,218,958 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NSD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,140,148 - 79,309,579 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,141,114 - 79,304,820 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607510,326,178 - 10,497,901 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nsd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,786,347 - 12,927,980 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,781,693 - 12,929,861 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000025930   ⟹   ENSSTOP00000023043
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365971,428,601 - 1,572,419 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000037343   ⟹   ENSSTOP00000026274
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365971,425,974 - 1,572,715 (+)Ensembl
RefSeq Acc Id: XM_005333164   ⟹   XP_005333221
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213122,401,437 - 122,552,286 (+)NCBI
SpeTri2.0NW_0049365971,426,318 - 1,577,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005333165   ⟹   XP_005333222
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213122,403,629 - 122,552,286 (+)NCBI
SpeTri2.0NW_0049365971,428,601 - 1,577,193 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021731589   ⟹   XP_021587264
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213122,403,570 - 122,546,028 (+)NCBI
SpeTri2.0NW_0049365971,428,379 - 1,570,884 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040272116   ⟹   XP_040128050
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213122,401,170 - 122,552,286 (+)NCBI
RefSeq Acc Id: XM_040272117   ⟹   XP_040128051
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213122,401,441 - 122,552,286 (+)NCBI
RefSeq Acc Id: XM_040272118   ⟹   XP_040128052
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213122,401,170 - 122,552,286 (+)NCBI
RefSeq Acc Id: XP_005333221   ⟸   XM_005333164
- Peptide Label: isoform X1
- UniProtKB: A0A287CYD9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005333222   ⟸   XM_005333165
- Peptide Label: isoform X2
- UniProtKB: I3NF96 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021587264   ⟸   XM_021731589
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040128050   ⟸   XM_040272116
- Peptide Label: isoform X1
- UniProtKB: A0A287CYD9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128052   ⟸   XM_040272118
- Peptide Label: isoform X2
- UniProtKB: I3NF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040128051   ⟸   XM_040272117
- Peptide Label: isoform X2
- UniProtKB: I3NF96 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000023043   ⟸   ENSSTOT00000025930
RefSeq Acc Id: ENSSTOP00000026274   ⟸   ENSSTOT00000037343
Protein Domains
AWS   PHD-type   Post-SET   PWWP   SET


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000020045 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025930.2 UniProtKB/TrEMBL
  ENSSTOT00000037343.1 UniProtKB/TrEMBL
Gene3D-CATH 2.170.270.10 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
InterPro AWS_dom UniProtKB/TrEMBL
  C5HCH UniProtKB/TrEMBL
  PHD1_NSD1_2 UniProtKB/TrEMBL
  PHD2_NSD1 UniProtKB/TrEMBL
  PHD3_NSD1 UniProtKB/TrEMBL
  PHD4_NSD1 UniProtKB/TrEMBL
  PHD5_NSD1 UniProtKB/TrEMBL
  Post-SET_dom UniProtKB/TrEMBL
  PWWP_dom UniProtKB/TrEMBL
  PWWP_NSD1_rpt2 UniProtKB/TrEMBL
  SET_dom UniProtKB/TrEMBL
  SET_dom_sf UniProtKB/TrEMBL
  SET_NSD1 UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
NCBI Gene Nsd1 ENTREZGENE
PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC UniProtKB/TrEMBL
  SET DOMAIN PROTEINS UniProtKB/TrEMBL
Pfam AWS UniProtKB/TrEMBL
  C5HCH UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
PROSITE AWS UniProtKB/TrEMBL
  POST_SET UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART AWS UniProtKB/TrEMBL
  PHD UniProtKB/TrEMBL
  PostSET UniProtKB/TrEMBL
  PWWP UniProtKB/TrEMBL
  SET UniProtKB/TrEMBL
Superfamily-SCOP SSF57903 UniProtKB/TrEMBL
  SSF82199 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A287CYD9 ENTREZGENE, UniProtKB/TrEMBL
  I3NF96 ENTREZGENE, UniProtKB/TrEMBL