Slc38a9 (solute carrier family 38 member 9) - Rat Genome Database

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Gene: Slc38a9 (solute carrier family 38 member 9) Ictidomys tridecemlineatus
Analyze
Symbol: Slc38a9
Name: solute carrier family 38 member 9
RGD ID: 12581280
Description: ENCODES a protein that exhibits amino acid transmembrane transporter activity (inferred); cholesterol binding (inferred); guanyl-nucleotide exchange factor activity (inferred); INVOLVED IN amino acid transmembrane transport (inferred); amino acid transport (inferred); asparagine transport (inferred); ASSOCIATED WITH genetic disease (ortholog); Liver Neoplasms (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN Ragulator complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sodium-coupled neutral amino acid transporter 9; solute carrier family 38 member 9, transcript variant X1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,167,196 - 203,262,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,103,693 - 12,195,358 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,103,697 - 12,198,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Slc38a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213203,167,196 - 203,262,973 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648012,103,693 - 12,195,358 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648012,103,697 - 12,198,592 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC38A9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38555,625,845 - 55,712,335 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl555,625,845 - 55,773,194 (-)EnsemblGRCh38hg38GRCh38
GRCh37554,921,673 - 55,008,163 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36554,957,435 - 55,043,852 (-)NCBINCBI36Build 36hg18NCBI36
Celera551,875,777 - 51,961,881 (-)NCBICelera
Cytogenetic Map5q11.2NCBI
HuRef551,895,210 - 51,981,393 (-)NCBIHuRef
CHM1_1554,925,864 - 55,012,366 (-)NCBICHM1_1
T2T-CHM13v2.0556,453,712 - 56,540,626 (-)NCBIT2T-CHM13v2.0
Slc38a9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913112,792,723 - 112,875,286 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13112,797,285 - 112,875,283 (+)EnsemblGRCm39 Ensembl
GRCm3813112,656,189 - 112,738,752 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13112,660,751 - 112,738,749 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713113,450,974 - 113,528,960 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613113,781,654 - 113,853,776 (+)NCBIMGSCv36mm8
Celera13116,969,812 - 117,051,744 (+)NCBICelera
Cytogenetic Map13D2.2NCBI
cM Map1363.93NCBI
Slc38a9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8246,024,731 - 46,102,419 (+)NCBIGRCr8
mRatBN7.2244,291,637 - 44,374,897 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl244,291,989 - 44,368,955 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx251,417,505 - 51,482,408 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0249,475,942 - 49,540,776 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0244,349,547 - 44,416,361 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0244,512,556 - 44,592,793 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl244,512,895 - 44,592,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0263,554,196 - 63,634,429 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4244,044,770 - 44,110,884 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1243,961,910 - 44,040,250 (+)NCBI
Celera240,082,412 - 40,147,573 (+)NCBICelera
Cytogenetic Map2q14NCBI
Slc38a9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544612,042,313 - 12,132,211 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544612,042,848 - 12,132,211 (+)NCBIChiLan1.0ChiLan1.0
SLC38A9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2458,223,410 - 58,308,449 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1556,377,185 - 56,463,038 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0558,312,101 - 58,397,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1559,936,081 - 60,020,771 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl559,944,034 - 60,020,769 (+)Ensemblpanpan1.1panPan2
SLC38A9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1242,921,906 - 43,004,265 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl242,922,494 - 42,991,577 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha239,968,649 - 40,050,988 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0243,387,804 - 43,470,243 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl243,387,807 - 43,470,208 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1240,465,898 - 40,548,267 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0241,267,439 - 41,349,747 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0242,088,670 - 42,171,039 (-)NCBIUU_Cfam_GSD_1.0
SLC38A9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1634,768,987 - 34,858,747 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11634,639,575 - 34,858,827 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21636,889,795 - 36,974,298 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC38A9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1451,876,430 - 51,961,914 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl451,876,268 - 51,948,012 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666049752,110 - 837,809 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc38a9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247593,606,708 - 3,706,376 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247593,603,510 - 3,707,000 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000025249   ⟹   ENSSTOP00000019285
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493648012,103,693 - 12,195,358 (+)Ensembl
RefSeq Acc Id: XM_005319624   ⟹   XP_005319681
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,200 - 203,262,973 (+)NCBI
SpeTri2.0NW_00493648012,103,697 - 12,198,592 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040271904   ⟹   XP_040127838
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,200 - 203,262,973 (+)NCBI
RefSeq Acc Id: XM_040271905   ⟹   XP_040127839
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,596 - 203,262,973 (+)NCBI
RefSeq Acc Id: XM_040271906   ⟹   XP_040127840
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,200 - 203,262,973 (+)NCBI
RefSeq Acc Id: XM_040271907   ⟹   XP_040127841
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,189,979 - 203,262,973 (+)NCBI
RefSeq Acc Id: XM_040271908   ⟹   XP_040127842
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,196 - 203,252,116 (+)NCBI
RefSeq Acc Id: XM_040271909   ⟹   XP_040127843
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,196 - 203,252,216 (+)NCBI
RefSeq Acc Id: XR_002483339
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,200 - 203,255,286 (+)NCBI
SpeTri2.0NW_00493648012,103,697 - 12,191,769 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005727764
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,198 - 203,256,634 (+)NCBI
RefSeq Acc Id: XR_005727765
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,200 - 203,252,118 (+)NCBI
RefSeq Acc Id: XR_005727766
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,197 - 203,256,639 (+)NCBI
RefSeq Acc Id: XR_005727767
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,196 - 203,256,610 (+)NCBI
RefSeq Acc Id: XR_005727768
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213203,167,196 - 203,252,118 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_005319681   ⟸   XM_005319624
- Peptide Label: isoform X1
- UniProtKB: I3N4I9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040127843   ⟸   XM_040271909
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040127842   ⟸   XM_040271908
- Peptide Label: isoform X4
RefSeq Acc Id: XP_040127838   ⟸   XM_040271904
- Peptide Label: isoform X1
- UniProtKB: I3N4I9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040127840   ⟸   XM_040271906
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040127839   ⟸   XM_040271905
- Peptide Label: isoform X1
- UniProtKB: I3N4I9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040127841   ⟸   XM_040271907
- Peptide Label: isoform X3
RefSeq Acc Id: ENSSTOP00000019285   ⟸   ENSSTOT00000025249
Protein Domains
Amino acid transporter transmembrane


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024679 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025249.2 UniProtKB/TrEMBL
InterPro AA_transpt_TM UniProtKB/TrEMBL
NCBI Gene Slc38a9 ENTREZGENE
PANTHER AMINO ACID TRANSPORTER UniProtKB/TrEMBL
  SODIUM-COUPLED NEUTRAL AMINO ACID TRANSPORTER 9 UniProtKB/TrEMBL
Pfam Aa_trans UniProtKB/TrEMBL
UniProt I3N4I9 ENTREZGENE, UniProtKB/TrEMBL