Prelid2 (PRELI domain containing 2) - Rat Genome Database

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Gene: Prelid2 (PRELI domain containing 2) Ictidomys tridecemlineatus
Analyze
Symbol: Prelid2
Name: PRELI domain containing 2
RGD ID: 12579619
Description: ENCODES a protein that exhibits phosphatidic acid transfer activity (inferred); ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); genetic disease (ortholog); Hereditary Neoplastic Syndromes (ortholog); FOUND IN mitochondrial intermembrane space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: PRELI domain containing 2, transcript variant X1; PRELI domain containing 2, transcript variant X2; PRELI domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213147,245,612 - 147,331,310 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365048,819,701 - 8,896,398 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365048,819,605 - 8,902,272 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Prelid2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213147,245,612 - 147,331,310 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365048,819,701 - 8,896,398 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365048,819,605 - 8,902,272 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRELID2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385145,228,985 - 145,835,342 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5145,471,799 - 145,835,369 (-)EnsemblGRCh38hg38GRCh38
GRCh375145,135,907 - 145,214,905 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365145,118,775 - 145,195,092 (-)NCBINCBI36Build 36hg18NCBI36
Celera5141,218,657 - 141,295,020 (-)NCBICelera
Cytogenetic Map5q32NCBI
HuRef5140,285,255 - 140,361,624 (-)NCBIHuRef
CHM1_15144,571,333 - 144,647,656 (-)NCBICHM1_1
T2T-CHM13v2.05145,764,055 - 146,369,665 (-)NCBIT2T-CHM13v2.0
Prelid2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391842,008,761 - 42,084,259 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1842,008,665 - 42,084,307 (-)EnsemblGRCm39 Ensembl
GRCm381841,875,696 - 41,951,194 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1841,875,600 - 41,951,242 (-)EnsemblGRCm38mm10GRCm38
MGSCv371842,035,350 - 42,110,848 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361842,001,575 - 42,077,148 (-)NCBIMGSCv36mm8
Celera1843,238,328 - 43,313,750 (-)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1822.02NCBI
Prelid2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81834,120,989 - 34,212,699 (-)NCBIGRCr8
mRatBN7.21833,869,934 - 33,961,320 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1833,873,599 - 33,961,225 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1833,978,473 - 34,065,304 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01834,696,829 - 34,783,628 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01834,073,725 - 34,160,552 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01836,198,522 - 36,286,217 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1836,194,778 - 36,285,444 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01835,866,984 - 35,953,092 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41835,060,008 - 35,154,130 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1833,471,920 - 33,558,789 (-)NCBICelera
Cytogenetic Map18p11NCBI
Prelid2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554158,259,575 - 8,342,179 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554158,259,707 - 8,342,179 (+)NCBIChiLan1.0ChiLan1.0
PRELID2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24140,629,953 - 141,088,851 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15139,094,915 - 139,228,418 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05141,156,705 - 141,284,898 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15147,221,089 - 147,299,954 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5147,169,209 - 147,300,018 (-)Ensemblpanpan1.1panPan2
PRELID2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1240,222,178 - 40,290,025 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl240,226,178 - 40,294,917 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha237,267,146 - 37,334,979 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0240,685,142 - 40,753,189 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl240,685,294 - 40,753,214 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1237,752,970 - 37,820,736 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0238,569,148 - 38,637,067 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0239,393,976 - 39,461,879 (-)NCBIUU_Cfam_GSD_1.0
PRELID2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2147,109,586 - 147,191,614 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12147,101,820 - 147,191,736 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22153,519,343 - 153,619,122 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRELID2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12348,343,211 - 48,419,881 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2348,341,455 - 48,419,058 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603429,372,459 - 29,448,306 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prelid2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247745,211,825 - 5,319,604 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247745,212,083 - 5,319,286 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000002415   ⟹   ENSSTOP00000002161
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365048,819,701 - 8,896,398 (+)Ensembl
RefSeq Acc Id: XM_005324217   ⟹   XP_005324274
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213147,245,614 - 147,331,310 (+)NCBI
SpeTri2.0NW_0049365048,819,605 - 8,902,272 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021725702   ⟹   XP_021581377
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213147,245,612 - 147,295,814 (+)NCBI
SpeTri2.0NW_0049365048,819,605 - 8,869,792 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005324274 (Get FASTA)   NCBI Sequence Viewer  
  XP_021581377 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000002161.2
GenBank Protein KAG3266051 (Get FASTA)   NCBI Sequence Viewer  
  KAG3266052 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_005324274   ⟸   XM_005324217
- Peptide Label: isoform X1
- UniProtKB: I3M0D6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_021581377   ⟸   XM_021725702
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSTOP00000002161   ⟸   ENSSTOT00000002415
Protein Domains
PRELI/MSF1


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000002416 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000002415.3 UniProtKB/TrEMBL
InterPro PRELI/MSF1_dom UniProtKB/TrEMBL
  Slowmo/Ups UniProtKB/TrEMBL
NCBI Gene Prelid2 ENTREZGENE
PANTHER PRELI DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
  PTHR11158 UniProtKB/TrEMBL
Pfam PRELI UniProtKB/TrEMBL
PROSITE PRELI_MSF1 UniProtKB/TrEMBL
UniProt I3M0D6 ENTREZGENE, UniProtKB/TrEMBL