Elf4 (E74 like ETS transcription factor 4) - Rat Genome Database

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Gene: Elf4 (E74 like ETS transcription factor 4) Ictidomys tridecemlineatus
Analyze
Symbol: Elf4
Name: E74 like ETS transcription factor 4
RGD ID: 12579308
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription activator activity, RNA polymerase II-specific (inferred); DNA-binding transcription factor activity (inferred); INVOLVED IN cell differentiation (inferred); natural killer cell proliferation (inferred); negative regulation of inflammatory response (inferred); ASSOCIATED WITH autistic disorder (ortholog); AUTOINFLAMMATORY SYNDROME, FAMILIAL, X-LINKED, BEHCET-LIKE 2 (ortholog); genetic disease (ortholog); FOUND IN nuclear body (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ETS-related transcription factor Elf-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,455,082 - 99,493,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364791,519,874 - 1,530,733 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364791,519,663 - 1,534,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Elf4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X99,455,082 - 99,493,997 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364791,519,874 - 1,530,733 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364791,519,663 - 1,534,510 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ELF4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X130,063,955 - 130,111,927 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX130,063,955 - 130,110,716 (-)EnsemblGRCh38hg38GRCh38
GRCh37X129,197,930 - 129,244,866 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X129,026,586 - 129,072,153 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X128,924,439 - 128,970,001NCBI
CeleraX129,585,456 - 129,631,249 (-)NCBICelera
Cytogenetic MapXq26.1NCBI
HuRefX118,596,924 - 118,641,306 (-)NCBIHuRef
CHM1_1X129,110,060 - 129,156,280 (-)NCBICHM1_1
T2T-CHM13v2.0X128,382,755 - 128,430,731 (-)NCBIT2T-CHM13v2.0
Elf4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X47,499,926 - 47,552,009 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX47,499,923 - 47,552,009 (-)EnsemblGRCm39 Ensembl
GRCm38X48,411,049 - 48,463,132 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX48,411,046 - 48,463,132 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X45,764,226 - 45,816,309 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X44,657,866 - 44,668,983 (-)NCBIMGSCv36mm8
CeleraX35,913,039 - 35,964,933 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX25.67NCBI
Elf4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X132,465,290 - 132,508,175 (-)NCBIGRCr8
mRatBN7.2X127,587,401 - 127,639,063 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX127,590,650 - 127,630,200 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX129,716,413 - 129,726,326 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X133,287,190 - 133,297,133 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X130,813,579 - 130,823,480 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X135,239,626 - 135,284,330 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX135,240,451 - 135,250,519 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X135,308,635 - 135,356,120 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X134,808,886 - 134,818,835 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX126,539,770 - 126,549,715 (-)NCBICelera
Cytogenetic MapXq36NCBI
Elf4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554734,942,385 - 4,986,433 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554734,934,770 - 4,986,283 (+)NCBIChiLan1.0ChiLan1.0
ELF4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X129,484,609 - 129,531,128 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X129,489,178 - 129,536,178 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X119,191,921 - 119,237,548 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X129,486,097 - 129,531,764 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX129,486,097 - 129,531,764 (-)Ensemblpanpan1.1panPan2
ELF4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X101,220,524 - 101,268,050 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX101,221,573 - 101,259,818 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX87,399,295 - 87,445,781 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X103,070,798 - 103,082,076 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX103,070,862 - 103,084,666 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X100,495,152 - 100,541,662 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X102,341,435 - 102,387,685 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X102,119,556 - 102,166,051 (-)NCBIUU_Cfam_GSD_1.0
ELF4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX106,617,753 - 106,661,108 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X106,617,747 - 106,661,340 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X122,388,435 - 122,429,683 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ELF4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X105,321,440 - 105,366,489 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX105,320,952 - 105,337,560 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606542,744,751 - 42,790,939 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Elf4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247979,286,173 - 9,330,381 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247979,285,586 - 9,330,291 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


RefSeq Acc Id: ENSSTOT00000008338   ⟹   ENSSTOP00000007472
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049364791,519,874 - 1,530,733 (+)Ensembl
RefSeq Acc Id: XM_021722359   ⟹   XP_021578034
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X99,455,082 - 99,493,997 (-)NCBI
SpeTri2.0NW_0049364791,519,663 - 1,534,510 (+)NCBI
Sequence:
RefSeq Acc Id: XM_040285298   ⟹   XP_040141232
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X99,455,082 - 99,469,326 (-)NCBI
RefSeq Acc Id: XM_040285303   ⟹   XP_040141237
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X99,455,082 - 99,493,997 (-)NCBI
RefSeq Acc Id: XM_040285306   ⟹   XP_040141240
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2X99,455,082 - 99,493,997 (-)NCBI
Protein Sequences
Protein RefSeqs XP_021578034 (Get FASTA)   NCBI Sequence Viewer  
  XP_040141232 (Get FASTA)   NCBI Sequence Viewer  
  XP_040141237 (Get FASTA)   NCBI Sequence Viewer  
  XP_040141240 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000007472.3
GenBank Protein KAG3272900 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021578034   ⟸   XM_021722359
- Peptide Label: isoform X1
- UniProtKB: I3MBG1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040141240   ⟸   XM_040285306
- Peptide Label: isoform X3
- UniProtKB: I3MBG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141237   ⟸   XM_040285303
- Peptide Label: isoform X2
- UniProtKB: I3MBG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040141232   ⟸   XM_040285298
- Peptide Label: isoform X1
- UniProtKB: I3MBG1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000007472   ⟸   ENSSTOT00000008338
Protein Domains
ETS


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000008325 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000008338.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Ets_dom UniProtKB/TrEMBL
  ETS_fam UniProtKB/TrEMBL
  TF_Elf_N UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene Elf4 ENTREZGENE
PANTHER PTHR11849 UniProtKB/TrEMBL
  PTHR11849:SF170 UniProtKB/TrEMBL
Pfam Elf-1_N UniProtKB/TrEMBL
  Ets UniProtKB/TrEMBL
PRINTS ETSDOMAIN UniProtKB/TrEMBL
PROSITE ETS_DOMAIN_1 UniProtKB/TrEMBL
  ETS_DOMAIN_2 UniProtKB/TrEMBL
  ETS_DOMAIN_3 UniProtKB/TrEMBL
SMART ETS UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt I3MBG1 ENTREZGENE, UniProtKB/TrEMBL