LOC101956200 (probable ATP-dependent RNA helicase DDX46) - Rat Genome Database

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Gene: LOC101956200 (probable ATP-dependent RNA helicase DDX46) Ictidomys tridecemlineatus
Analyze
Symbol: LOC101956200 (Ensembl: DDX46)
Name: probable ATP-dependent RNA helicase DDX46
RGD ID: 12576125
Description: ENCODES a protein that exhibits ATP binding (inferred); helicase activity (inferred); hydrolase activity (inferred); INVOLVED IN mRNA splicing, via spliceosome (inferred); FOUND IN fibrillar center (inferred); nuclear speck (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Ddx46; DEAD (Asp-Glu-Ala-Asp) box polypeptide 46; putative ATP-dependent RNA helicase DDX46
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,983,207 - 123,014,822 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,996,577 - 2,052,600 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365972,007,910 - 2,039,739 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021731603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010002273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSSTOT00000020955   ⟹   ENSSTOP00000021578
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365971,996,577 - 2,052,600 (+)Ensembl
RefSeq Acc Id: ENSSTOT00000030457   ⟹   ENSSTOP00000024806
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049365971,996,577 - 2,052,600 (+)Ensembl
RefSeq Acc Id: XM_021731603   ⟹   XP_021587278
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024407213122,983,207 - 123,014,822 (+)NCBI
SpeTri2.0NW_0049365972,007,910 - 2,039,739 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_021587278 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000021578.2
  ENSSTOP00000024806.1
GenBank Protein KAG3265797 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_021587278   ⟸   XM_021731603
- Sequence:
RefSeq Acc Id: ENSSTOP00000021578   ⟸   ENSSTOT00000020955
RefSeq Acc Id: ENSSTOP00000024806   ⟸   ENSSTOT00000030457
Protein Domains
DEAD-box RNA helicase Q   Helicase ATP-binding   Helicase C-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000025564 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000020955.2 UniProtKB/TrEMBL
  ENSSTOT00000030457.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro DEAD/DEAH_box_helicase_dom UniProtKB/TrEMBL
  Helicase_ATP-bd UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
  RNA-helicase_DEAD-box_CS UniProtKB/TrEMBL
  RNA_helicase_DEAD_Q_motif UniProtKB/TrEMBL
NCBI Gene LOC101956200 ENTREZGENE
PANTHER ATP-DEPENDENT RNA HELICASE UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE DBP3 UniProtKB/TrEMBL
  ATP-DEPENDENT RNA HELICASE DDX46-RELATED UniProtKB/TrEMBL
  RNA HELICASE UniProtKB/TrEMBL
Pfam DEAD UniProtKB/TrEMBL
  Helicase_C UniProtKB/TrEMBL
PROSITE DEAD_ATP_HELICASE UniProtKB/TrEMBL
  HELICASE_ATP_BIND_1 UniProtKB/TrEMBL
  HELICASE_CTER UniProtKB/TrEMBL
  Q_MOTIF UniProtKB/TrEMBL
SMART DEXDc UniProtKB/TrEMBL
  HELICc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A287CU48_ICTTR UniProtKB/TrEMBL
  I3NB31_ICTTR UniProtKB/TrEMBL