Nlrp10 (NLR family pyrin domain containing 10) - Rat Genome Database

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Gene: Nlrp10 (NLR family pyrin domain containing 10) Ictidomys tridecemlineatus
Analyze
Symbol: Nlrp10
Name: NLR family pyrin domain containing 10
RGD ID: 12575981
Description: ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); GTPase activity (ortholog); INVOLVED IN activation of innate immune response (ortholog); defense response to fungus (ortholog); positive regulation of defense response to bacterium (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasm (ortholog); cytoplasmic side of plasma membrane (ortholog); cytosol (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: NACHT, LRR and PYD domains-containing protein 10
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,904,189 - 53,935,973 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365289,938,270 - 9,969,115 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Nlrp10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494753,904,189 - 53,935,973 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365289,938,270 - 9,969,115 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NLRP10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38117,957,537 - 7,965,447 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl117,957,537 - 7,965,447 (-)EnsemblGRCh38hg38GRCh38
GRCh37117,979,084 - 7,986,994 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36117,937,732 - 7,941,635 (-)NCBINCBI36Build 36hg18NCBI36
Build 34117,937,766 - 7,941,624NCBI
Celera118,096,691 - 8,100,602 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef117,647,886 - 7,651,799 (-)NCBIHuRef
CHM1_1117,980,153 - 7,984,057 (-)NCBICHM1_1
T2T-CHM13v2.0118,036,705 - 8,044,619 (-)NCBIT2T-CHM13v2.0
Nlrp10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397108,521,060 - 108,529,365 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7108,521,059 - 108,529,385 (-)EnsemblGRCm39 Ensembl
GRCm387108,921,853 - 108,930,158 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7108,921,852 - 108,930,178 (-)EnsemblGRCm38mm10GRCm38
MGSCv377116,065,367 - 116,073,672 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367108,713,030 - 108,721,335 (-)NCBIMGSCv36mm8
Celera7108,898,307 - 108,906,614 (-)NCBICelera
Cytogenetic Map7E3NCBI
cM Map757.21NCBI
Nlrp10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81172,357,648 - 172,365,205 (-)NCBIGRCr8
mRatBN7.21162,922,806 - 162,930,363 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1162,922,806 - 162,930,363 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1171,264,629 - 171,272,128 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01178,450,625 - 178,458,124 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01171,122,886 - 171,130,348 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01173,521,412 - 173,528,969 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1173,520,413 - 173,528,943 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01180,511,615 - 180,519,172 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41166,411,647 - 166,419,204 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11166,525,815 - 166,529,422 (+)NCBI
Celera1160,829,480 - 160,837,032 (-)NCBICelera
Cytogenetic Map1q33NCBI
NLRP10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2910,383,386 - 10,410,966 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11110,345,338 - 10,373,135 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0118,075,938 - 8,087,526 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1117,823,148 - 7,827,508 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl117,821,088 - 7,827,346 (-)Ensemblpanpan1.1panPan2
NLRP10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12131,500,718 - 31,518,337 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2131,501,550 - 31,503,616 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2131,069,970 - 31,087,526 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02132,374,627 - 32,392,219 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2132,375,091 - 32,379,305 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12131,644,469 - 31,662,005 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02131,810,608 - 31,828,178 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02132,104,338 - 32,121,916 (-)NCBIUU_Cfam_GSD_1.0
NLRP10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1156,814,157 - 56,835,447 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666038154,540,932 - 154,566,161 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nlrp10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624766172,727 - 177,029 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005326863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005326863   ⟹   XP_005326920
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440494753,904,189 - 53,935,973 (+)NCBI
SpeTri2.0NW_0049365289,938,270 - 9,969,115 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005326920 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005326920   ⟸   XM_005326863
- Sequence:


Additional Information

Database Acc Id Source(s)
NCBI Gene Nlrp10 ENTREZGENE