Cd164l2 (CD164 molecule like 2) - Rat Genome Database

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Gene: Cd164l2 (CD164 molecule like 2) Ictidomys tridecemlineatus
Analyze
Symbol: Cd164l2
Name: CD164 molecule like 2
RGD ID: 12575575
Description: ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytoplasmic vesicle (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,863,963 - 45,868,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,689,065 - 11,692,606 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,689,584 - 11,692,655 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Cd164l2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505845,863,963 - 45,868,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647411,689,065 - 11,692,606 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647411,689,584 - 11,692,655 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD164L2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38127,379,176 - 27,383,333 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl127,379,176 - 27,383,333 (-)EnsemblGRCh38hg38GRCh38
GRCh37127,705,666 - 27,709,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,578,183 - 27,582,392 (-)NCBINCBI36Build 36hg18NCBI36
Celera126,102,892 - 26,107,101 (-)NCBICelera
Cytogenetic Map1p36.11NCBI
HuRef125,961,740 - 25,965,949 (-)NCBIHuRef
CHM1_1127,820,342 - 27,824,551 (-)NCBICHM1_1
T2T-CHM13v2.0127,220,481 - 27,224,643 (-)NCBIT2T-CHM13v2.0
Cd164l2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394132,948,120 - 132,951,865 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4132,939,442 - 132,951,866 (+)EnsemblGRCm39 Ensembl
GRCm384133,220,809 - 133,224,554 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4133,212,131 - 133,224,555 (+)EnsemblGRCm38mm10GRCm38
MGSCv374132,776,724 - 132,780,469 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364132,483,839 - 132,496,627 (+)NCBIMGSCv36mm8
MGSCv364130,781,597 - 130,793,814 (+)NCBIMGSCv36mm8
Celera4131,388,969 - 131,389,931 (+)NCBICelera
Cytogenetic Map4D2.3NCBI
cM Map466.24NCBI
Cd164l2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85150,698,662 - 150,711,622 (+)NCBIGRCr8
mRatBN7.25145,414,805 - 145,427,747 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5145,423,892 - 145,427,720 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5148,127,226 - 148,131,087 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05149,896,821 - 149,900,690 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05149,881,817 - 149,885,643 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05151,397,798 - 151,417,690 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5151,413,382 - 151,417,690 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05155,063,613 - 155,083,521 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45151,901,501 - 151,905,459 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5143,845,415 - 143,849,084 (+)NCBICelera
Cytogenetic Map5q36NCBI
Cd164l2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049561631,399 - 4,928 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049561631,090 - 5,032 (-)NCBIChiLan1.0ChiLan1.0
CD164L2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21199,467,442 - 199,472,956 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11198,584,122 - 198,589,636 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,640,799 - 26,646,333 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1127,688,605 - 27,692,632 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl127,688,605 - 27,692,650 (-)Ensemblpanpan1.1panPan2
CD164L2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1272,891,334 - 72,896,318 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl272,892,320 - 72,902,172 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha269,468,291 - 69,473,283 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0273,452,980 - 73,457,972 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl273,453,966 - 73,463,814 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1270,278,984 - 70,283,975 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0271,290,469 - 71,295,451 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0272,286,507 - 72,291,505 (+)NCBIUU_Cfam_GSD_1.0
CD164L2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl684,598,321 - 84,602,930 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1684,598,406 - 84,602,871 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2678,169,614 - 78,174,082 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD164L2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120105,405,837 - 105,414,617 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl20105,406,110 - 105,414,617 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603311,048,791 - 11,053,280 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd164l2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476411,272,882 - 11,276,947 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476411,273,141 - 11,276,885 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000030013   ⟹   ENSSTOP00000015676
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493647411,689,065 - 11,692,606 (-)Ensembl
RefSeq Acc Id: XM_040288182   ⟹   XP_040144116
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,167 (-)NCBI
RefSeq Acc Id: XM_040288183   ⟹   XP_040144117
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,167 (-)NCBI
RefSeq Acc Id: XM_040288184   ⟹   XP_040144118
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,370 (-)NCBI
RefSeq Acc Id: XM_040288185   ⟹   XP_040144119
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,158 (-)NCBI
RefSeq Acc Id: XM_040288186   ⟹   XP_040144120
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,158 (-)NCBI
RefSeq Acc Id: XM_040288187   ⟹   XP_040144121
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,150 (-)NCBI
RefSeq Acc Id: XM_040288188   ⟹   XP_040144122
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,156 (-)NCBI
RefSeq Acc Id: XM_040288189   ⟹   XP_040144123
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,157 (-)NCBI
RefSeq Acc Id: XM_040288190   ⟹   XP_040144124
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,864,802 - 45,868,156 (-)NCBI
RefSeq Acc Id: XR_005735038
Type: NON-CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505845,863,963 - 45,868,167 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_040144118   ⟸   XM_040288184
- Peptide Label: isoform X2
RefSeq Acc Id: XP_040144117   ⟸   XM_040288183
- Peptide Label: isoform X1
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144116   ⟸   XM_040288182
- Peptide Label: isoform X1
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144120   ⟸   XM_040288186
- Peptide Label: isoform X3
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144119   ⟸   XM_040288185
- Peptide Label: isoform X3
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144123   ⟸   XM_040288189
- Peptide Label: isoform X5
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144122   ⟸   XM_040288188
- Peptide Label: isoform X4
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144121   ⟸   XM_040288187
- Peptide Label: isoform X4
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040144124   ⟸   XM_040288190
- Peptide Label: isoform X6
- UniProtKB: I3MU81 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000015676   ⟸   ENSSTOT00000030013


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000024078 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000030013.2 UniProtKB/TrEMBL
InterPro CD164_MGC24 UniProtKB/TrEMBL
NCBI Gene Cd164l2 ENTREZGENE
PANTHER CD164 SIALOMUCIN-LIKE 2 PROTEIN UniProtKB/TrEMBL
  PTHR11337 UniProtKB/TrEMBL
Pfam MGC-24 UniProtKB/TrEMBL
UniProt I3MU81 ENTREZGENE, UniProtKB/TrEMBL