Nhlh2 (nescient helix-loop-helix 2) - Rat Genome Database

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Gene: Nhlh2 (nescient helix-loop-helix 2) Ictidomys tridecemlineatus
Analyze
Symbol: Nhlh2
Name: nescient helix-loop-helix 2
RGD ID: 12575354
Description: ENCODES a protein that exhibits DNA-binding transcription activator activity, RNA polymerase II-specific (ortholog); RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); RNA polymerase II transcription regulatory region sequence-specific DNA binding (ortholog); INVOLVED IN apoptotic process (ortholog); cell migration in hindbrain (ortholog); hypothalamus gonadotrophin-releasing hormone neuron development (ortholog); ASSOCIATED WITH obesity (ortholog); FOUND IN chromatin (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: helix-loop-helix protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505813,353,914 - 13,358,661 (+)NCBI
SpeTri2.0NW_0049366271,130,064 - 1,135,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
Nhlh2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505813,353,914 - 13,358,661 (+)NCBI
SpeTri2.0NW_0049366271,130,064 - 1,135,092 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NHLH2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1115,836,377 - 115,843,917 (-)EnsemblGRCh38hg38GRCh38
GRCh381115,830,777 - 115,841,126 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371116,378,998 - 116,383,747 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361116,180,521 - 116,185,270 (-)NCBINCBI36hg18NCBI36
Build 341116,091,039 - 116,095,789NCBI
Celera1114,607,811 - 114,612,562 (-)NCBI
Cytogenetic Map1p13.1NCBI
HuRef1114,236,931 - 114,241,683 (-)NCBIHuRef
CHM1_11116,493,794 - 116,498,543 (-)NCBICHM1_1
Nhlh2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm393101,917,425 - 101,922,808 (+)NCBIGRCm39mm39
GRCm39 Ensembl3101,917,392 - 101,922,808 (+)Ensembl
GRCm383102,010,111 - 102,015,492 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl3102,010,076 - 102,015,492 (+)EnsemblGRCm38mm10GRCm38
MGSCv373101,814,068 - 101,819,415 (+)NCBIGRCm37mm9NCBIm37
MGSCv363102,139,216 - 102,143,567 (+)NCBImm8
Celera3104,213,826 - 104,219,176 (+)NCBICelera
Cytogenetic Map3F2.2NCBI
Nhlh2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22189,444,287 - 189,449,625 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl2189,442,711 - 189,449,625 (+)Ensembl
Rnor_6.02204,427,577 - 204,432,946 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2204,427,608 - 204,432,946 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02223,860,974 - 223,866,312 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42197,099,516 - 197,104,854 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12197,064,770 - 197,065,178 (+)NCBI
Celera2181,878,118 - 181,883,456 (+)NCBICelera
Cytogenetic Map2q34NCBI
Nhlh2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543519,068,761 - 19,075,257 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543519,070,715 - 19,073,678 (-)NCBIChiLan1.0ChiLan1.0
NHLH2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11121,771,957 - 121,776,934 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1121,774,940 - 121,775,347 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0186,719,650 - 86,727,607 (+)NCBIMhudiblu_PPA_v0panPan3
NHLH2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11753,359,275 - 53,363,753 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1753,359,258 - 53,458,795 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1753,009,555 - 53,031,683 (-)NCBI
ROS_Cfam_1.01754,241,618 - 54,263,553 (-)NCBI
UMICH_Zoey_3.11753,280,410 - 53,302,487 (-)NCBI
UNSW_CanFamBas_1.01753,315,432 - 53,337,564 (-)NCBI
UU_Cfam_GSD_1.01753,888,717 - 53,910,668 (-)NCBI
NHLH2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4104,857,635 - 104,858,042 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.14104,852,287 - 104,858,042 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24114,943,248 - 114,949,052 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NHLH2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12017,865,226 - 17,869,955 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2017,867,929 - 17,868,336 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366603820,575,051 - 20,577,618 (+)NCBIVero_WHO_p1.0
Nhlh2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462477211,609,825 - 11,614,937 (-)NCBIHetGla_female_1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAESOR010000117 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005334916   ⟹   XP_005334973
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505813,353,914 - 13,358,661 (+)NCBI
SpeTri2.0NW_0049366271,130,064 - 1,135,092 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005334973 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3281208 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_005334973   ⟸   XM_005334916
- UniProtKB: I3MWS1 (UniProtKB/TrEMBL)
- Sequence:


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000019698 ENTREZGENE
Ensembl Protein ENSSTOP00000016566 ENTREZGENE
NCBI Gene Nhlh2 ENTREZGENE
UniProt I3MWS1 ENTREZGENE