Chad (chondroadherin) - Rat Genome Database

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Gene: Chad (chondroadherin) Ictidomys tridecemlineatus
Analyze
Symbol: Chad
Name: chondroadherin
RGD ID: 12574720
Description: INVOLVED IN bone development (ortholog); cartilage condensation (ortholog); negative regulation of bone trabecula formation (ortholog); ASSOCIATED WITH genetic disease (ortholog); trichodontoosseous syndrome (ortholog); FOUND IN extracellular matrix (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,830,717 - 25,835,093 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,240,419 - 11,245,935 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,240,487 - 11,244,422 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Chad
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560225,830,717 - 25,835,093 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649011,240,419 - 11,245,935 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649011,240,487 - 11,244,422 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CHAD
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381750,464,496 - 50,468,880 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1750,464,496 - 50,468,906 (-)EnsemblGRCh38hg38GRCh38
GRCh371748,541,857 - 48,546,241 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361745,896,852 - 45,901,226 (-)NCBINCBI36Build 36hg18NCBI36
Build 341745,896,859 - 45,901,322NCBI
Celera1745,003,146 - 45,007,520 (-)NCBICelera
Cytogenetic Map17q21.33NCBI
HuRef1743,909,670 - 43,914,045 (-)NCBIHuRef
CHM1_11748,605,721 - 48,610,095 (-)NCBICHM1_1
T2T-CHM13v2.01751,331,492 - 51,338,062 (-)NCBIT2T-CHM13v2.0
Chad
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391194,455,873 - 94,459,953 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1194,455,873 - 94,459,953 (+)EnsemblGRCm39 Ensembl
GRCm381194,565,047 - 94,569,127 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1194,565,047 - 94,569,127 (+)EnsemblGRCm38mm10GRCm38
MGSCv371194,426,388 - 94,430,441 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361194,381,165 - 94,385,217 (+)NCBIMGSCv36mm8
Celera11104,186,496 - 104,190,549 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1158.9NCBI
Chad
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81080,009,045 - 80,012,816 (+)NCBIGRCr8
mRatBN7.21079,512,170 - 79,515,941 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1079,511,931 - 79,515,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1084,116,871 - 84,120,642 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01083,614,977 - 83,618,748 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01079,129,976 - 79,133,747 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01082,290,296 - 82,296,146 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1082,292,110 - 82,296,651 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01082,109,902 - 82,115,752 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41083,201,982 - 83,205,753 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11083,216,351 - 83,220,122 (+)NCBI
Celera1078,299,492 - 78,303,263 (+)NCBICelera
Cytogenetic Map10q26NCBI
Chad
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545111,285,822 - 11,289,644 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545111,285,822 - 11,289,644 (+)NCBIChiLan1.0ChiLan1.0
CHAD
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21966,656,364 - 66,660,817 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11771,463,442 - 71,469,553 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01744,558,931 - 44,565,450 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11749,432,883 - 49,437,279 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1749,432,883 - 49,437,337 (-)Ensemblpanpan1.1panPan2
CHAD
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1926,397,902 - 26,401,824 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl926,398,595 - 26,402,204 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha925,790,669 - 25,794,670 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0927,192,073 - 27,196,074 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl927,192,844 - 27,196,001 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1925,959,846 - 25,963,847 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0926,218,516 - 26,222,527 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0926,348,569 - 26,352,570 (-)NCBIUU_Cfam_GSD_1.0
CHAD
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1226,742,494 - 26,746,214 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11226,741,737 - 26,746,364 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21226,830,719 - 26,836,245 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CHAD
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11642,864,813 - 42,871,272 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1642,866,741 - 42,872,023 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607713,583,125 - 13,587,574 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Chad
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247956,364,236 - 6,368,727 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247956,364,226 - 6,368,633 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000011727   ⟹   ENSSTOP00000010522
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_00493649011,240,419 - 11,245,935 (+)Ensembl
RefSeq Acc Id: XM_040268921   ⟹   XP_040124855
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440560225,830,717 - 25,835,093 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040124855 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000010522.2
GenBank Protein KAG3269235 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_040124855   ⟸   XM_040268921
- UniProtKB: I3MHW3 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSSTOP00000010522   ⟸   ENSSTOT00000011727
Protein Domains
LRRCT   LRRNT


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000011729 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000011727.3 UniProtKB/TrEMBL
Gene3D-CATH 3.80.10.10 UniProtKB/TrEMBL
InterPro Cys-rich_flank_reg_C UniProtKB/TrEMBL
  Leu-rich_rpt UniProtKB/TrEMBL
  Leu-rich_rpt_typical-subtyp UniProtKB/TrEMBL
  LRR_dom_sf UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
NCBI Gene Chad ENTREZGENE
PANTHER CHONDROADHERIN UniProtKB/TrEMBL
  SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN UniProtKB/TrEMBL
Pfam LRR_8 UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
SMART LRR_TYP UniProtKB/TrEMBL
  LRRCT UniProtKB/TrEMBL
  LRRNT UniProtKB/TrEMBL
Superfamily-SCOP L domain-like UniProtKB/TrEMBL
UniProt I3MHW3 ENTREZGENE, UniProtKB/TrEMBL